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Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.
● Data Source:
BioConductor
● Keywords: package
● Alias: CGHcall-package
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CGHcall
(Package: CGHcall) :
Calling aberrations for array CGH tumor profiles.
Calls aberrations for array CGH data using a six state mixture model.
● Data Source:
BioConductor
● Keywords: misc
● Alias: CGHcall
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ExpandCGHcall
(Package: CGHcall) :
Expands result fron CGHcall to CGHcall object.
Expands result from CGHcall function to CGHcall object.
● Data Source:
BioConductor
● Keywords: misc
● Alias: ExpandCGHcall
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normalize
(Package: CGHcall) :
Normalization and cellularity adjustment for arrayCGH data.
This function normalizes arrayCGH data using the global mode or median. It can also adjust for the cellularity of your data.
● Data Source:
BioConductor
● Keywords: misc
● Alias: normalize
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This function normalizes arrayCGH data after segmentation in order to find a better 0-level.
● Data Source:
BioConductor
● Keywords: misc
● Alias: postsegnormalize
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preprocess
(Package: CGHcall) :
Preprocess arrayCGH data
This function preprocesses your aCGH data so it can be processed by other functions without errors.
● Data Source:
BioConductor
● Keywords: misc
● Alias: preprocess
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segmentData
(Package: CGHcall) :
Breakpoint detection for arrayCGH data.
A wrapper function to run existing breakpoint detection algorithms on arrayCGH data. Currently only DNAcopy is implemented.
● Data Source:
BioConductor
● Keywords: misc
● Alias: segmentData
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providing 
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