CNA
(Package: DNAcopy) :
Create `Copy Number Array' data object
Creates a ‘copy number array’ data object used for DNA copy number analyses by programs such as circular binary segmentation (CBS).
● Data Source:
BioConductor
● Keywords: nonparametric
● Alias: CNA, print.CNA
●
0 images
|
|
Internal functions of package DNAcopy.
● Data Source:
BioConductor
● Keywords: internal
● Alias: changepoints, changepoints.prune, changepoints.sdundo, exon.changepoint, inflfact, smooth.data, trimmed.variance
●
0 images
|
DNAcopy
(Package: DNAcopy) :
Results of segmenting a CNA data object
The results of segmenting data from copy number array experiments from programs such as circular binary segmentation (CBS).
● Data Source:
BioConductor
● Keywords: nonparametric
● Alias: DNAcopy, print.DNAcopy
●
0 images
|
exon.segment
(Package: DNAcopy) :
Binary segmentation of exon data.
Compute the binary segmentation statistic, location and approximate p-value.
● Data Source:
BioConductor
● Keywords: nonparametric
● Alias: exon.segment
●
0 images
|
getbdry
(Package: DNAcopy) :
Sequential stopping boundary
Function to compute the sequential boundary for early stopping.
● Data Source:
BioConductor
● Keywords: nonparametric
● Alias: default.DNAcopy.bdry, getbdry
●
0 images
|
glFrequency
(Package: DNAcopy) :
Additional summary measured for the segments
This program computes the frequency of gains and losses for each probe as a function of level of mad.
● Data Source:
BioConductor
● Keywords: nonparametric
● Alias: glFrequency
●
0 images
|
plot.DNAcopy
(Package: DNAcopy) :
Plot the data and results from segment of a CNA object
Plots the data from a copy number array experiment (aCGH, ROMA etc.) along with the results of segmenting it into regions of equal copy numbers.
● Data Source:
BioConductor
● Keywords: nonparametric
● Alias: plot.DNAcopy
●
10 images
|
plotSample
(Package: DNAcopy) :
Plot the data and results from segmentation for a single sample
Plots the data for a single sample from a copy number array experiment (aCGH, ROMA etc.) along with the results of segmenting it into regions of equal copy numbers.
● Data Source:
BioConductor
● Keywords: nonparametric
● Alias: plotSample
●
2 images
|
segment
(Package: DNAcopy) :
Genome Segmentation Program
This program segments DNA copy number data into regions of estimated equal copy number using circular binary segmentation (CBS).
● Data Source:
BioConductor
● Keywords: nonparametric
● Alias: segment
●
3 images
|
segments.p
(Package: DNAcopy) :
p-values for the change-points
This program computes pseudo p-values and confidence intervals for the change-points found by the circular binary segmentation (CBS) algorithm.
● Data Source:
BioConductor
● Keywords: nonparametric
● Alias: segments.p
●
1 images
|
providing 
.