DNAcopy

Package: DNAcopy
Title: DNA copy number data analysis
Version: 1.46.0
Author: Venkatraman E. Seshan, Adam Olshen
Description: Implements the circular binary segmentation (CBS)
algorithm to segment DNA copy number data and identify
genomic regions with abnormal copy number.
Maintainer: Venkatraman E. Seshan <seshanv@mskcc.org>
LazyData: yes
License: GPL (>= 2)
biocViews: Microarray, CopyNumberVariation
NeedsCompilation: yes
Packaged: 2016-05-04 02:41:35 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'DNAcopy' ...
** libs
f95   -fpic  -g -O2  -c cbsWtstats.f -o cbsWtstats.o
f95   -fpic  -g -O2  -c cbststats.f -o cbststats.o
f95   -fpic  -g -O2  -c changepoints-wtd.f -o changepoints-wtd.o
f95   -fpic  -g -O2  -c changepoints.f -o changepoints.o
f95   -fpic  -g -O2  -c esegment.f -o esegment.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c flchoose.c -o flchoose.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c fphyper.c -o fphyper.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c fpnorm.c -o fpnorm.o
f95   -fpic  -g -O2  -c getbdry.f -o getbdry.o
f95   -fpic  -g -O2  -c prune.f -o prune.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c rshared.c -o rshared.o
f95   -fpic  -g -O2  -c segmentp.f -o segmentp.o
f95   -fpic  -g -O2  -c smoothCNA.f -o smoothCNA.o
f95   -fpic  -g -O2  -c tailprobs.f -o tailprobs.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/DNAcopy/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'DNAcopy'
    finding HTML links ... done
    CNA                                     html  
    DNAcopy-internal                        html  
    DNAcopy                                 html  
    coriell                                 html  
    cytoBand                                html  
    exon.segment                            html  
    getbdry                                 html  
    glFrequency                             html  
    plot.DNAcopy                            html  
    plotSample                              html  
    segment                                 html  
    segments.p                              html  
    segments.summary                        html  
    smooth.CNA                              html  
    subset.CNA                              html  
    subset.DNAcopy                          html  
    zoomIntoRegion                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DNAcopy)
Making 'packages.html' ... done