R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 10 of 28 found.
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DenNHist (Package: EBSeq) :

'DenNHist' gives the density plot that compares the empirical q's and the simulated q's from the fitted beta distribution.

● Data Source: BioConductor
● Keywords: beta
● Alias: DenNHist
● 1 images

EBMultiTest (Package: EBSeq) :

'EBMultiTest' is built based on the assumption of NB-Beta Empirical Bayes model. It utilizes the EM algorithm to give the posterior probability of the interested patterns.

● Data Source: BioConductor
● Keywords: DE, Multiple Condition
● Alias: EBMultiTest
● 0 images

EBSeq_NingLeng-package (Package: EBSeq) :

In 'EBSeq_NingLeng-package,' a Negative Binomial-beta model was built to analyze the RNASeq data. We used the empirical bayes method and EM algrithom.

● Data Source: BioConductor
● Keywords: package
● Alias: EBSeq_NingLeng, EBSeq_NingLeng-package
● 0 images

EBTest (Package: EBSeq) :

Base on the assumption of NB-Beta Empirical Bayes model, the EM algorithm is used to get the posterior probability of being DE.

● Data Source: BioConductor
● Keywords: DE, Two condition
● Alias: EBTest
● 0 images

GetDEResults (Package: EBSeq) :

Obtain DE analysis results in a two-condition test using the output of EBTest()

● Data Source: BioConductor
● Keywords: DE, Two condition
● Alias: GetDEResults
● 0 images

GetMultiFC (Package: EBSeq) :

'GetMultiFC' calculates the Fold Changes for each pair of conditions in a multiple condition study.

● Data Source: BioConductor
● Keywords: Posterior Probability
● Alias: GetMultiFC
● 0 images

GetMultiPP (Package: EBSeq) :

'GetMultiPP' generates the Posterior Probability of being each pattern of each transcript based on the EBMultiTest output.

● Data Source: BioConductor
● Keywords: Posterior Probability
● Alias: GetMultiPP
● 0 images

GetNg (Package: EBSeq) :

'GetNg' generates the Ng vector for the isoform level data. (While using the number of isoform in the host gene to define the uncertainty groups.)

● Data Source: BioConductor
● Keywords: Ng
● Alias: GetNg
● 0 images

GetNormalizedMat (Package: EBSeq) :

'GetNormalizedMat' calculates the normalized expression matrix. (Note: this matrix is only used for visualization etc. EBTes and EBMultiTest request *un-adjusted* expressions and normalization factors.)

● Data Source: BioConductor
● Keywords: Normalization
● Alias: GetNormalizedMat
● 0 images

GetPP (Package: EBSeq) :

'GetPP' generates the Posterior Probability of being DE of each transcript based on the EBTest output.

● Data Source: BioConductor
● Keywords: Posterior Probability
● Alias: GetPP
● 0 images