EBSeq

Package: EBSeq
Type: Package
Title: An R package for gene and isoform differential expression
analysis of RNA-seq data
Version: 1.12.0
Date: 2015-12-8
Author: Ning Leng, Christina Kendziorski
Maintainer: Ning Leng <lengning1@gmail.com>
Depends: blockmodeling, gplots, testthat, R (>= 3.0.0)
Description: Differential Expression analysis at both gene and isoform
level using RNA-seq data
License: Artistic-2.0
LazyLoad: yes
Collate: 'MedianNorm.R' 'GetNg.R' 'beta.mom.R' 'f0.R' 'f1.R'
'Likefun.R' 'LogN.R' 'LogNMulti.R' 'LikefunMulti.R' 'EBTest.R'
'GetPatterns.R' 'EBMultiTest.R' 'GetPP.R' 'PostFC.R'
'GetPPMat.R' 'GetMultiPP.R' 'GetMultiFC.R' 'PlotPostVsRawFC.R'
'crit_fun.R' 'DenNHist.R' 'GetNormalizedMat.R' 'PlotPattern.R'
'PolyFitPlot.R' 'QQP.R' 'QuantileNorm.R' 'RankNorm.R'
'GetDEResults.R'
BuildVignettes: yes
biocViews: StatisticalMethod, DifferentialExpression,
MultipleComparison, RNASeq, Sequencing
NeedsCompilation: no
Packaged: 2016-05-04 04:59:18 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'EBSeq' ...
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'EBSeq'
    finding HTML links ... done
    DenNHist                                html  
    EBMultiTest                             html  
    EBSeq_NingLeng-package                  html  
    EBTest                                  html  
    GeneMat                                 html  
    GetDEResults                            html  
    GetMultiFC                              html  
    GetMultiPP                              html  
    GetNg                                   html  
    GetNormalizedMat                        html  
    GetPP                                   html  
    GetPPMat                                html  
    GetPatterns                             html  
    IsoList                                 html  
    IsoMultiList                            html  
    Likefun                                 html  
    LikefunMulti                            html  
    LogN                                    html  
    LogNMulti                               html  
    MedianNorm                              html  
    MultiGeneMat                            html  
    PlotPattern                             html  
    PlotPostVsRawFC                         html  
    PolyFitPlot                             html  
    PostFC                                  html  
    QQP                                     html  
    QuantileNorm                            html  
    RankNorm                                html  
    beta.mom                                html  
    crit_fun                                html  
    f0                                      html  
    f1                                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (EBSeq)
Making 'packages.html' ... done