R Graphical Manual

Last data update: 2014.03.03

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Classification

Results 1 - 10 of 14 found.
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GDS-class (Package: GEOquery) : Class "GDS"

A class describing a GEO GDS entity

● Data Source: BioConductor
● Keywords: classes
● Alias: GDS-class
● 0 images

Converting (Package: GEOquery) : Convert a GDS data structure to a BioConductor data structure

Functions to take a GDS data structure from getGEO and coerce it to limma MALists or ExpressionSets.

● Data Source: BioConductor
● Keywords: IO
● Alias: GDS2MA, GDS2eSet
● 0 images

GEOData-class (Package: GEOquery) : Class "GEOData"

A virtual class for holding GEO samples, platforms, and datasets

● Data Source: BioConductor
● Keywords: classes
● Alias: Accession,GEOData-method, Columns,GEOData-method, GEOData-class, Meta,GEOData-method, Table,GEOData-method, dataTable,GEOData-method, show,GEOData-method
● 0 images

GEODataTable-class (Package: GEOquery) : Class "GEODataTable"

Contains the column descriptions and data for the datatable part of a GEO object

● Data Source: BioConductor
● Keywords: classes
● Alias: Accession,GEODataTable-method, Columns,GEODataTable-method, GEODataTable-class, Meta,GEODataTable-method, Table,GEODataTable-method, dataTable,GEODataTable-method, show,GEODataTable-method
● 0 images

GPL-class (Package: GEOquery) : Class "GPL"

Contains a full GEO Platform entity

● Data Source: BioConductor
● Keywords: classes
● Alias: GPL-class
● 0 images

GSE-class (Package: GEOquery) : Class "GSE"

Contains a GEO Series entity

● Data Source: BioConductor
● Keywords: classes
● Alias: GPLList,GSE-method, GSE-class, GSMList,GSE-method, Meta,GSE-method
● 0 images

GSM-class (Package: GEOquery) : Class "GSM"

A class containing a GEO Sample entity

● Data Source: BioConductor
● Keywords: classes
● Alias: GSM-class
● 0 images

Generic functions (Package: GEOquery) : Generic functions for GEOquery

The main documentation is in the Class documentation

● Data Source: BioConductor
● Keywords: IO
● Alias: Accession, Columns, GPLList, GSMList, Meta, Table, dataTable
● 0 images

getGEO (Package: GEOquery) : Get a GEO object from NCBI or file

This function is the main user-level function in the GEOquery package. It directs the download (if no filename is specified) and parsing of a GEO SOFT format file into an R data structure specifically designed to make access to each of the important parts of the GEO SOFT format easily accessible.

● Data Source: BioConductor
● Keywords: IO
● Alias: getGEO
● 0 images

getGEOSuppFiles (Package: GEOquery) : Get Supplemental Files from GEO

NCBI GEO allows supplemental files to be attached to GEO Series (GSE), GEO platforms (GPL), and GEO samples (GSM). This function "knows" how to get these files based on the GEO accession. No parsing of the downloaded files is attempted, since the file format is not generally knowable by the computer.

● Data Source: BioConductor
● Keywords: IO, database
● Alias: getGEOSuppFiles
● 0 images