GOSemSim-package
(Package: GOSemSim) :
Gene Ontology-based Sematic Similarity Measures
Implementation of semantic similarity measures to estimate the functional similarities among Gene Ontology terms and gene products
● Data Source:
BioConductor
● Keywords: package
● Alias: GOSemSim, GOSemSim-package
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clusterSim
(Package: GOSemSim) :
Semantic Similarity Between Two Gene Clusters
Given two gene clusters, this function calculates semantic similarity between them.
● Data Source:
BioConductor
● Keywords: manip
● Alias: clusterSim
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combineScores
(Package: GOSemSim) :
combining similarity matrix to similarity score
Functions for combining similarity matrix to similarity score
● Data Source:
BioConductor
● Keywords:
● Alias: combineScores
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geneSim
(Package: GOSemSim) :
Semantic Similarity Between two Genes
Given two genes, this function will calculate the semantic similarity between them, and return their semantic similarity and the corresponding GO terms
● Data Source:
BioConductor
● Keywords: manip
● Alias: geneSim
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mapping organism name to annotationDb package name
● Data Source:
BioConductor
● Keywords:
● Alias: getDb
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get supported organisms
● Data Source:
BioConductor
● Keywords:
● Alias: getSupported_Org
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goSim
(Package: GOSemSim) :
Semantic Similarity Between Two GO Terms
Given two GO IDs, this function calculates their semantic similarity.
● Data Source:
BioConductor
● Keywords: manip
● Alias: goSim
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Information Content Based Methods for semantic similarity measuring
● Data Source:
BioConductor
● Keywords:
● Alias: infoContentMethod
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loading GOMap to GOSemSimEnv
● Data Source:
BioConductor
● Keywords:
● Alias: loadGOMap
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Load Information Content data to DOSEEnv environment
● Data Source:
BioConductor
● Keywords:
● Alias: loadICdata
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providing 
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