GOSemSim

Package: GOSemSim
Type: Package
Title: GO-terms Semantic Similarity Measures
Version: 1.30.2
Authors@R: c(person(given = "Guangchuang", family = "Yu",
email = "guangchuangyu@gmail.com",
role = c("aut", "cre")),
person(given = "Alexey", family = "Stukalov",
email = "astukalov@gmail.com",
role = "ctb"),
person(given = "Chuanle", family = "Xiao",
email = "xiaochuanle@126.com",
role = "ctb"))
Author: Guangchuang Yu <guangchuangyu@gmail.com> with contributions from
Alexey Stukalov and Chuanle Xiao.
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Description: Implemented five methods proposed by Resnik, Schlicker,
Jiang, Lin and Wang respectively for estimating GO semantic
similarities. Support many species, including Anopheles,
Arabidopsis, Bovine, Canine, Chicken, Chimp, Coelicolor, E coli
strain K12 and Sakai, Fly, Gondii, Human, Malaria, Mouse, Pig, Rhesus,
Rat, Worm, Xenopus, Yeast, and Zebrafish.
Depends: R (>= 3.2.0)
LinkingTo: Rcpp
Imports: Rcpp, AnnotationDbi, GO.db, utils
Suggests: DOSE, clusterProfiler, org.Hs.eg.db, knitr, BiocStyle,
BiocInstaller
VignetteBuilder: knitr
License: Artistic-2.0
URL: http://guangchuangyu.github.io/GOSemSim
BugReports: https://github.com/GuangchuangYu/GOSemSim/issues
Packaged: 2016-05-16 02:01:07 UTC; biocbuild
biocViews: Annotation, GO, Clustering, Pathways, Network, Software
RoxygenNote: 5.0.1
NeedsCompilation: yes

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'GOSemSim' ...
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c ICmethod.cpp -o ICmethod.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o GOSemSim.so ICmethod.o RcppExports.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/GOSemSim/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'GOSemSim'
    finding HTML links ... done
    GOSemSim-package                        html  
    IC                                      html  
    clusterSim                              html  
    combineScores                           html  
    geneSim                                 html  
    getDb                                   html  
    getSupported_Org                        html  
    goSim                                   html  
    infoContentMethod                       html  
    loadGOMap                               html  
    loadICdata                              html  
    mclusterSim                             html  
    mgeneSim                                html  
    mgoSim                                  html  
    termSim                                 html  
    wangMethod                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GOSemSim)
Making 'packages.html' ... done