R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Results 1 - 9 of 9 found.
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GSA.listsets (Package: GSA) : List the results from a Gene set analysis

List the results from a call to GSA (Gene set analysis)

● Data Source: CranContrib
● Keywords: nonparametric, survival, ts, univar
● Alias: GSA.listsets
● 0 images

GSA.plot (Package: GSA) : Plot the results from a Gene set analysis

Plots the results from a call to GSA (Gene set analysis)

● Data Source: CranContrib
● Keywords: nonparametric, survival, ts, univar
● Alias: GSA.plot
● 1 images

GSA (Package: GSA) : Gene set analysis

Determines the significance of pre-defined sets of genes with respect to an outcome variable, such as a group indicator, a quantitative variable or a survival time

● Data Source: CranContrib
● Keywords: nonparametric, survival, ts, univar
● Alias: GSA
● 0 images

GSA.func (Package: GSA) : Gene set analysis without permutations

Determines the significance of pre-defined sets of genes with respect to an outcome variable, such as a group indicator, quantitative variable or survival time. This is the basic function called by GSA.

● Data Source: CranContrib
● Keywords: nonparametric, survival, ts, univar
● Alias: GSA.func
● 0 images

GSA.correlate (Package: GSA) : "Correlates" a gene set collection with a given list of gene nams

"Correlates" a gene set collection with a given list of gene names. Gives info on the overlap between the collection and the list of genes

● Data Source: CranContrib
● Keywords: nonparametric, survival, ts, univar
● Alias: GSA.correlate
● 0 images

GSA.genescores (Package: GSA) : Individual gene scores from a gene set analysis

Compute individual gene scores from a gene set analysis

● Data Source: CranContrib
● Keywords: nonparametric, survival, ts, univar
● Alias: GSA.genescores
● 0 images

GSA.make.features (Package: GSA) : Creates features from a GSA analysis that can be used in other procedures

Creates features from a GSA analysis that can be used in other procedures, for example, sample classification.

● Data Source: CranContrib
● Keywords: survival, ts, univar
● Alias: GSA.make.features
● 0 images

GSA.read.gmt (Package: GSA) : Read in a gene set collection from a .gmt file

Read in a gene set collection from a .gmt file

● Data Source: CranContrib
● Keywords: nonparametric, survival, ts, univar
● Alias: GSA.read.gmt
● 0 images

GSA-internal (Package: GSA) : Internal GSA functions

Internal samr functions

● Data Source: CranContrib
● Keywords: internal
● Alias: GSA.xl.correlate, GSA.xl.genescores, GSA.xl.plot, GSA.xl.summary, GSA.xl.summary.genesets, cox.func, coxstuff, coxvar, ests0, multiclass.func, print.GSA, print.GSA.func, quantitative.func, summary.GSA.genesets, ttest.func, varr
● 0 images