GoogleGenomics
(Package: GoogleGenomics) :
A basic R package for Google Genomics API.
This project is in active development - the current code is very minimal and a lot of work is left.
● Data Source:
BioConductor
● Keywords:
● Alias: GoogleGenomics, GoogleGenomics-package
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authenticate
(Package: GoogleGenomics) :
Configure how to authenticate for Google Genomics API.
Follow the sign up instructions at https://cloud.google.com/genomics/install-genomics-tools#authenticate to download the client secrets file, or note the clientId and clientSecret pair.
● Data Source:
BioConductor
● Keywords:
● Alias: authenticate
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getReads
(Package: GoogleGenomics) :
Get reads from Google Genomics.
This function will return all of the reads that comprise the requested genomic range, iterating over paginated results as necessary.
● Data Source:
BioConductor
● Keywords:
● Alias: getReads
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getReadsPage
(Package: GoogleGenomics) :
Get one page of reads from Google Genomics.
In general, use the getReads method instead. It calls this method, returning reads from all of the pages that comprise the requested genomic range.
● Data Source:
BioConductor
● Keywords:
● Alias: getReadsPage
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getSearchPage
(Package: GoogleGenomics) :
Get one page of search results for a particular entity type from Google
In general, use higher level methods such as getReads and getVariants instead.
● Data Source:
BioConductor
● Keywords:
● Alias: getSearchPage
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This function will return all of the variants that comprise the requested genomic range, iterating over paginated results as necessary.
● Data Source:
BioConductor
● Keywords:
● Alias: getVariants
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getVariantsPage
(Package: GoogleGenomics) :
Get one page of variants from Google Genomics.
In general, use the getVariants method instead. It calls this method, returning variants from all of the pages that comprise the requested genomic range.
● Data Source:
BioConductor
● Keywords:
● Alias: getVariantsPage
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Note that the Global Alliance for Genomics and Health API uses a 0-based coordinate system. For more detail, please see GA4GH discussions such as the following:
● Data Source:
BioConductor
● Keywords:
● Alias: readsToGAlignments
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Note that the Global Alliance for Genomics and Health API uses a 0-based coordinate system. For more detail, please see GA4GH discussions such as the following:
● Data Source:
BioConductor
● Keywords:
● Alias: variantsToGRanges
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Note that the Global Alliance for Genomics and Health API uses a 0-based coordinate system. For more detail, please see GA4GH discussions such as the following:
● Data Source:
BioConductor
● Keywords:
● Alias: variantsToVRanges
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providing 
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