GoogleGenomics

Package: GoogleGenomics
Version: 1.4.2
Date: 2015-07-13
Title: R Client for Google Genomics API
Authors@R: c(person("Cassie", "Doll", role = c("aut")),
person("Nicole", "Deflaux", role = c("aut")),
person("Siddhartha", "Bagaria", role = c("aut", "cre"),
email="sidb@google.com"))
Depends: R (>= 3.1.0), GenomicAlignments (>= 1.0.1), VariantAnnotation
Imports: Biostrings, GenomeInfoDb, GenomicRanges, IRanges, httr, rjson,
Rsamtools, S4Vectors (>= 0.9.25)
Suggests: BiocStyle, httpuv, knitr, rmarkdown, testthat, ggbio,
ggplot2, BSgenome.Hsapiens.UCSC.hg19, org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene
Description: Provides an R package to interact with the Google Genomics API.
VignetteBuilder: knitr
License: Apache License (== 2.0) | file LICENSE
URL: https://cloud.google.com/genomics/
BugReports: https://github.com/Bioconductor/GoogleGenomics/issues
biocViews: DataImport, ThirdPartyClient
NeedsCompilation: no
Packaged: 2016-05-16 05:25:22 UTC; biocbuild
Author: Cassie Doll [aut],
Nicole Deflaux [aut],
Siddhartha Bagaria [aut, cre]
Maintainer: Siddhartha Bagaria <sidb@google.com>

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'GoogleGenomics' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'GoogleGenomics'
    finding HTML links ... done
    GoogleGenomics                          html  
    authenticate                            html  
Rd warning: /tmp/RtmpV4ozwU/R.INSTALL5adf21e7d0e8/GoogleGenomics/man/authenticate.Rd:23: missing file link 'httpuv'
    getReads                                html  
    getReadsPage                            html  
    getSearchPage                           html  
    getVariants                             html  
    getVariantsPage                         html  
    readsToGAlignments                      html  
Rd warning: /tmp/RtmpV4ozwU/R.INSTALL5adf21e7d0e8/GoogleGenomics/man/readsToGAlignments.Rd:18: missing file link 'GAlignments'
    variantsToGRanges                       html  
Rd warning: /tmp/RtmpV4ozwU/R.INSTALL5adf21e7d0e8/GoogleGenomics/man/variantsToGRanges.Rd:18: missing file link 'GRanges'
    variantsToVRanges                       html  
Rd warning: /tmp/RtmpV4ozwU/R.INSTALL5adf21e7d0e8/GoogleGenomics/man/variantsToVRanges.Rd:18: missing file link 'VRanges'
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GoogleGenomics)
Making 'packages.html' ... done