IdeoViz-package
(Package: IdeoViz) :
Plots continuous or discrete data along chromosomal ideogram
Plotting discrete or continuous dataseries in the context of chromosomal location has several useful applications in genomic analysis. Examples of possible metrics include RNA expression levels, densities of epigenetic marks or genomic variation, while applications could range from the analysis of a single variable in a single context, to multiple measurements in several biological contexts (e.g. age/sex/tissue/disease context). Visualization of metrics against the chromosome could identify:
● Data Source:
BioConductor
● Keywords: package
● Alias: IdeoViz-package
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avgByBin
(Package: IdeoViz) :
Aggregates data by genomic bins
Computed mean value of binned data. This function assumes that all elements in featureData have identical width. If provided with elements of disparate widths, the respective widths are not weighted averaging. This behaviour may change in future versions of IdeoViz.
● Data Source:
BioConductor
● Keywords:
● Alias: avgByBin
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Get uniformly-sized bins of specified width
● Data Source:
BioConductor
● Keywords:
● Alias: getBins
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getIdeo
(Package: IdeoViz) :
Download ideogram table from UCSC
Download table containing chromosomal extent and band locations from the UCSC genome browser
● Data Source:
BioConductor
● Keywords:
● Alias: getIdeo
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Base function which plots the ideogram and superimposed data for a single chromosome. plotOnIdeo() calls this function and stacks the resulting output.
● Data Source:
BioConductor
● Keywords:
● Alias: plotChromValuePair
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plotOnIdeo
(Package: IdeoViz) :
Plot data superimposed on chromosomal ideogram
Main function to plot binned data alongside chromosomal ideogram.
● Data Source:
BioConductor
● Keywords:
● Alias: plotOnIdeo
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providing 
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