weight.nuc
(Package: LCAextend) :
performs the computation of unnormalized triplet and individuals weights for a nuclear family in the pedigree
the weighting algorithm proceeds by nuclear family, the function weight.nuc computes the unnormalized triplet and individuals weights for a nuclear family in the pedigree. This is an internal function not meant to be called by the user.
● Data Source:
CranContrib
● Keywords:
● Alias: weight.nuc
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weight.famdep
(Package: LCAextend) :
performs the computation of triplet and individual weights for a pedigree under familial dependence
computes the triplet and the individual weights of the E step of the EM algorithm for a pedigree in the case of familial dependence. It returns also the overall log-likelihood of the observations. This is an internal function not meant to be called by the user.
● Data Source:
CranContrib
● Keywords:
● Alias: weight.famdep
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upward.connect
(Package: LCAextend) :
performs the upward step for a connector
computes the probability of the measurements below a connector conditionally to the connector latent class given the model parameters. This is an internal function not meant to be called by the user.
● Data Source:
CranContrib
● Keywords:
● Alias: upward.connect
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upward
(Package: LCAextend) :
performs the upward step of the peeling algorithm of a pedigree
computes the probability of observations below connectors conditionally to their classes given the model parameters. This is an internal function not meant to be called by the user.
● Data Source:
CranContrib
● Keywords:
● Alias: upward
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probs
(Package: LCAextend) :
probabilities parameters to be used for examples
a list of probability parameters such as the probability that a founder is assigned to each class, the transition probabilities and the probability that a child is symptomatic.
● Data Source:
CranContrib
● Keywords:
● Alias: probs
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peel
(Package: LCAextend) :
peeling order of pedigrees and couples in pedigrees
peel is a list of 48 entries, each gives the peeling order of the pedigrees and lists the couples in the 48 pedigrees of ped.cont and peed.ordi.
● Data Source:
CranContrib
● Keywords:
● Alias: peel
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ped.ordi
(Package: LCAextend) :
pedigrees with discrete or ordinal data to be used for examples
data set of 48 pedigrees: a matrix of pedigrees data with discrete or ordinal observations to be used for examples.
● Data Source:
CranContrib
● Keywords:
● Alias: ped.ordi
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ped.cont
(Package: LCAextend) :
pedigrees with continuous data to be used for examples
data set of 48 pedigrees: a matrix of pedigrees data with continuous observations to be used for examples.
● Data Source:
CranContrib
● Keywords:
● Alias: ped.cont
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param.ordi
(Package: LCAextend) :
parameters to be used for examples in the case of discrete or ordinal measurements
list of cumulative logistic coefficients for each measurement and each class to be used in examples for discrete or ordinal models.
● Data Source:
CranContrib
● Keywords:
● Alias: param.ordi
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param.cont
(Package: LCAextend) :
parameters to be used for examples in the case of continuous measurements
means and variance-covariance matrices for each class to be used in examples with continuous measurements.
● Data Source:
CranContrib
● Keywords:
● Alias: param.cont
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