R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
BioConductor
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Results 1 - 6 of 6 found.
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constrOptim2 (Package: LEAPFrOG) :

By Ravi Varadhan. Constrained optimisation for likelihood function, returning hessian matrix used for parameter standard errors.

● Data Source: CranContrib
● Keywords:
● Alias: constrOptim2
● 0 images

BEAPFrOG (Package: LEAPFrOG) : Bayesian Estimation of Admixture in Parental From Offspring Genotype

Provides estimates of admixture proportions in offspring and ungenotyped parents, using genotype data

● Data Source: CranContrib
● Keywords:
● Alias: BEAPFrOG
● 0 images

LEAPFrOG (Package: LEAPFrOG) : LEAPFrOG

Provides estimates of admixture proportions and parental divergence of these admixture proportions

● Data Source: CranContrib
● Keywords:
● Alias: LEAPFrOG
● 0 images

LEAPFrOG_EM (Package: LEAPFrOG) : LEAPFrOG Expectation Maximisation

Provides estimates of admixture proportions in offspring and ungenotyped parents, using phased data

● Data Source: CranContrib
● Keywords:
● Alias: LEAPFrOG_EM
● 0 images

LEAPFrOG_plot (Package: LEAPFrOG) : LEAPFrOG plotting function

Plots offspring and parental admiture proportions in the style of STRUCTURE, the popular population genetic software.

● Data Source: CranContrib
● Keywords:
● Alias: LEAPFrOG_plot
● 2 images

LEAPFrOG-package (Package: LEAPFrOG) :

Takes genotype data for a single individual, and allele frequencies for multiple populations, and returns estimations of admixture proportions for the individual, as well as the admixture proportion of their two parents.

● Data Source: CranContrib
● Keywords:
● Alias: LEAPFrOG-package
● 0 images