R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 9 of 9 found.
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mergeCoeff (Package: MergeMaid) : Class mergeCoeff, a class for storing regression coefficients.

This is the class representation for output from regression coefficient calculations

● Data Source: BioConductor
● Keywords: classes
● Alias: check.length, coeff, coeff,mergeCoeff-method, coeff<-, coeff<-,mergeCoeff-method, mergeCoeff, mergeCoeff-class, stdcoeff, stdcoeff,mergeCoeff-method, stdcoeff<-, stdcoeff<-,mergeCoeff-method, zscore, zscore,mergeCoeff-method, zscore<-, zscore<-,mergeCoeff-method
● 4 images

mergeCor (Package: MergeMaid) : Class mergeCor, a class for storing data relevant to integrative correlation coefficients.

This is the class representation for integrative correlation coefficients.

● Data Source: BioConductor
● Keywords: classes
● Alias: mergeCor, mergeCor-class
● 2 images

mergeExpressionSet (Package: MergeMaid) : Class mergeExpressionSet, a class for merged microarray data, and methods for

This is class representation for merged Microarray Data.

● Data Source: BioConductor
● Keywords: classes
● Alias: [,mergeExpressionSet-method, exprs,mergeExpressionSet-method, exprs<-,mergeExpressionSet,ANY-method, geneNames, geneNames,mergeExpressionSet-method, geneNames<-, geneNames<-,mergeExpressionSet-method, geneStudy, geneStudy,mergeExpressionSet-method, geneStudy<-, geneStudy<-,mergeExpressionSet-method, intCor,mergeExpressionSet-method, intcorDens,mergeExpressionSet-method, intersection,mergeExpressionSet-method, length,mergeExpressionSet-method, mergeExpressionSet, mergeExpressionSet-class, modelOutcome,mergeExpressionSet-method, names,mergeExpressionSet-method, names<-,mergeExpressionSet-method, notes,mergeExpressionSet-method, notes<-,mergeExpressionSet,ANY-method, phenoData,mergeExpressionSet-method, phenoData<-,mergeExpressionSet,ANY-method, plot,mergeExpressionSet-method, show,mergeExpressionSet-method, subsetmES, summary,mergeExpressionSet-method
● 3 images

intCor (Package: MergeMaid) : Correlation of Correlations

Given a mergeExpressionSet, this function calculates the study specific correlation matrices, and, for each gene, the correlation of correlations.

● Data Source: BioConductor
● Keywords: univar
● Alias: intCor
● 4 images

intcorDens (Package: MergeMaid) : plot of density functions of integrative correlations

Given a mergeExpressionSet, this function calculates and plots the density function of the approximate integrative correlations, as well as densities for the "null distributions" obtained by randomly permuting sample IDs.

● Data Source: BioConductor
● Keywords: hplot
● Alias: intcorDens
● 3 images

intersection (Package: MergeMaid) : ExpressionSet with all common genes in a mergeExpressionSet

Given a mergeExpressionSet, this function returns a single ExpressionSet. Only genes common to all studies are included. Expression data for all studies sits side by side in the 'exprs' slot. The 'notes' slot is used for inormation about the study identity of each sample.

● Data Source: BioConductor
● Keywords: manip
● Alias: intersection
● 0 images

mergeData (Package: MergeMaid) : MergeMaid instance data for merging

These are 3 artificial data sets, generated using rnorm(), for the purpose of illustrating the package. All are list objects. For some of the "genes", the expression values in the 3 datasets are not independent.

● Data Source: BioConductor
● Keywords: methods
● Alias: mergeData, sample1, sample2, sample3
● 0 images

mergeExprs (Package: MergeMaid) : Merge gene expression data sets

Merges gene expression data from different studies.

● Data Source: BioConductor
● Keywords: manip
● Alias: AverageDuplicates, check, mergeExprs, mergeget
● 2 images

modelOutcome (Package: MergeMaid) : Compare regression coefficients across studies

Given a set of merged studies, this function calculates study specific regression coefficients for each gene.

● Data Source: BioConductor
● Keywords: models
● Alias: modelOutcome
● 3 images