compPADOG
(Package: PADOG) :
Benchmark for gene set analysis methods using 24 datasets
This is a general purpose function to compare a given gene set analysis method in terms of sensitivity and ranking agains PADOG and GSA (if installed) using 24 public datasets.
filteranot
(Package: PADOG) :
Remove duplicate probesets/probes from an gene expression matrix based on p-values from a moderated t-test, in order to apply a gene set analysis.
This function helps to deal with multiple probesets/probes per gene prior to geneset analysis.
padog
(Package: PADOG) :
Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)
This is a general purpose gene set analysis method that downplays the importance of genes that apear often accross the sets of genes analyzed. The package provides also a benchmark for gene set analysis in terms of sensitivity and ranking using 24 public datasets.
providing 
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