PADOG

Package: PADOG
Version: 1.14.0
Date: 2015-03-20
Title: Pathway Analysis with Down-weighting of Overlapping Genes
(PADOG)
Author: Adi Laurentiu Tarca <atarca@med.wayne.edu>; Zhonghui Xu <zhonghui.xu@gmail.com>
Depends: R (>= 3.0.0), KEGGdzPathwaysGEO, methods, Biobase
Suggests: doParallel, parallel
Maintainer: Adi Laurentiu Tarca <atarca@med.wayne.edu>
Description: This package implements a general purpose gene set
analysis method called PADOG that downplays the importance of
genes that apear often accross the sets of genes to be
analyzed. The package provides also a benchmark for gene set
analysis methods in terms of sensitivity and ranking using 24
public datasets from KEGGdzPathwaysGEO package.
License: GPL (>= 2)
URL:
Collate: padog.R compPADOG.R filteranot.R
Imports: limma, AnnotationDbi, GSA, foreach, doRNG, hgu133plus2.db,
hgu133a.db, KEGG.db, nlme
LazyLoad: yes
biocViews: Microarray, OneChannel, TwoChannel
NeedsCompilation: no
Packaged: 2016-05-04 04:40:58 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'PADOG' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'PADOG'
    finding HTML links ... done
    compPADOG                               html  
    filteranot                              html  
    padog                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (PADOG)
Making 'packages.html' ... done