R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Classification

Results 1 - 10 of 54 found.
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calc.R2-methods (Package: PopGenome) : Linkage statistics (R2, P-value, Distance)

This generic function calculates some linkage disequilibrium statistics.

● Data Source: CranContrib
● Keywords: methods
● Alias: calc.R2,GENOME-method, calc.R2-methods
● 0 images

detail.stats-methods (Package: PopGenome) : Several statistics

This generic function calculates some mixed statistics.

● Data Source: CranContrib
● Keywords: methods
● Alias: detail.stats,GENOME-method, detail.stats-methods, get.detail,GENOME-method, get.detail-methods
● 0 images

set.ref.positions-methods (Package: PopGenome) : Set reference positions for SNP data

This generic function sets the positions of the SNP data. Should be used if you use alignment formats to store SNP data (i.e., data restricted to the polymorphic positions).

● Data Source: CranContrib
● Keywords: methods
● Alias: set.ref.positions,GENOME-method, set.ref.positions-methods
● 0 images

recomb.stats-methods (Package: PopGenome) : Recombination statistics

This generic function calculates the Four-Gamete test (Hudson 1985).

● Data Source: CranContrib
● Keywords: methods
● Alias: get.recomb,GENOME-method, get.recomb-methods, recomb.stats,GENOME-method, recomb.stats-methods
● 0 images

show.slots-methods (Package: PopGenome) : Show Slots of class GENOME

coming soon ...

● Data Source: CranContrib
● Keywords: methods
● Alias: show.slots,GENOME-method, show.slots-methods
● 0 images

concatenate.regions (Package: PopGenome) : Concatenate regions

This function concatenates the regions/chunks contained in one GENOME object.

● Data Source: CranContrib
● Keywords: methods
● Alias: concatenate.regions
● 0 images

get_gff_info (Package: PopGenome) : Annotation info

This function extracts annotation information from a GTF/GFF file.

● Data Source: CranContrib
● Keywords: methods
● Alias: get_gff_info
● 0 images

readHapMap (Package: PopGenome) : Read SNP data from the HapMap consortium

This function reads HapMap data.

● Data Source: CranContrib
● Keywords: methods
● Alias: readHapMap
● 0 images

test.params-class (Package: PopGenome) :

The object that contains the set parameter values can be passed to the function MS. This class simpliifes the process of passing on all necessary values to the MS function.

● Data Source: CranContrib
● Keywords: classes
● Alias: test.params, test.params-class
● 0 images

region.as.fasta-methods (Package: PopGenome) : Extract a region and write it to a FASTA file

This generic function writes a FASTA file of the observed biallelic positions to the current workspace.

● Data Source: CranContrib
● Keywords: methods
● Alias: region.as.fasta,GENOME-method, region.as.fasta-methods
● 0 images