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Draw one track of line plot. RCircos core components and graphics device must bae initialized before drawing.
● Data Source:
CranContrib
● Keywords: methods
● Alias: RCircos.Line.Plot
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Validate input dataset for correct chromosome names, chromosome start, and chromosome end positions. Chromosome names will be converted to character vectors if they are factor variables. This function is for internal use.
● Data Source:
CranContrib
● Keywords: methods
● Alias: RCircos.Validate.Genomic.Data
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Assign plot colors for each data point of genomic data except of link plot (link lines or ribbons). Users can define their own colors by appending a column with color names to plot data and give the column name as "PlotColor". Otherwise, default colors will be used.
● Data Source:
CranContrib
● Keywords: methods
● Alias: RCircos.Get.Plot.Colors
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Draw one track of scatter plot. RCircos core components and graphics device must be initialized before drawing.
● Data Source:
CranContrib
● Keywords: methods
● Alias: RCircos.Scatter.Plot
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Reset chromosome ideogram plot data. Reserved for advanced usage.
● Data Source:
CranContrib
● Keywords: methods
● Alias: RCircos.Reset.Plot.Ideogram
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Open an new window for plotting. RCircos core components must be initialized before call this function. All four margins are set to 0.25 and window size are set to plot.radius in RCircos parameters. This function is optional and could be replaced by call par(), plot.new(), and plot.window() if users want control the plot window by themselves.
● Data Source:
CranContrib
● Keywords: methods
● Alias: RCircos.Set.Plot.Area
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Draw one track of Tiles. RCircos core components and graphics device must be initialized before drawing.
● Data Source:
CranContrib
● Keywords: methods
● Alias: RCircos.Tile.Plot
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Validate chromosome ideogram information including of chromosome names, order of chromosomes, chromosome start and chromosome end positions for each chromosome band. This function is mainly for internal use.
● Data Source:
CranContrib
● Keywords: methods
● Alias: RCircos.Validate.Cyto.Info
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Calculate a quandratic Bezire curve between two points with (0,0) as control points. This function is for internal use.
● Data Source:
CranContrib
● Keywords: methods
● Alias: RCircos.Link.Line
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Get all parameters used in current RCircos session in order to check and reset plot parameters. RCircos core components must be initialized first.
● Data Source:
CranContrib
● Keywords: methods
● Alias: RCircos.Get.Plot.Parameters
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providing 
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