RCircos

Package: RCircos
Type: Package
Title: Circos 2D Track Plot
Version: 1.1.3
Date: 2015-12-20
Author: Hongen Zhang
Maintainer: Hongen Zhang <hzhang@mail.nih.gov>
Description: A simple and flexible way to generate Circos 2D track plot images for genomic data visualization is implemented in this package. The types of plots include: heatmap, histogram, lines, scatterplot, tiles and plot items for further decorations include connector, link (lines and ribbons), and text (gene) label. All functions require only R graphics package that comes with R base installation.
License: GPL (>= 2)
Depends: R (>= 2.10)
URL: http://bitbucket.org/henryhzhang/rcircos
NeedsCompilation: no
Packaged: 2015-12-11 22:17:24 UTC; hzhang
Repository: CRAN
Date/Publication: 2015-12-14 17:29:13

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'RCircos' ...
** package 'RCircos' successfully unpacked and MD5 sums checked
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'RCircos'
    finding HTML links ... done
    RCircos-package                         html  
    RCircos.Add.Ideogram.Tick               html  
    RCircos.Chromosome.Ideogram.Plot        html  
    RCircos.Clear.Track                     html  
    RCircos.Data.Point                      html  
    RCircos.Env                             html  
    RCircos.Gene.Connector.Plot             html  
    RCircos.Gene.Label.Data                 html  
    RCircos.Gene.Name.Plot                  html  
    RCircos.Get.Gene.Label.Locations        html  
    RCircos.Get.Heatmap.ColorScales         html  
    RCircos.Get.Link.Colors                 html  
    RCircos.Get.Plot.Colors                 html  
    RCircos.Get.Plot.Data                   html  
    RCircos.Get.Plot.Ideogram               html  
    RCircos.Get.Plot.Parameters             html  
    RCircos.Get.Plot.Positions              html  
    RCircos.Heatmap.Data                    html  
    RCircos.Heatmap.Plot                    html  
    RCircos.Histogram.Data                  html  
    RCircos.Histogram.Plot                  html  
    RCircos.Initialize.Parameters           html  
    RCircos.Line.Data                       html  
    RCircos.Line.Plot                       html  
    RCircos.Link.Data                       html  
    RCircos.Link.Line                       html  
    RCircos.Link.Plot                       html  
    RCircos.List.Parameters                 html  
    RCircos.Mouse.Expr.Data                 html  
    RCircos.Multiple.Species.Core.Components
                                            html  
    RCircos.Multiple.Species.Dataset        html  
    RCircos.Rat.Expr.Data                   html  
    RCircos.Reset.Plot.Ideogram             html  
    RCircos.Reset.Plot.Parameters           html  
    RCircos.Reset.Plot.Positions            html  
    RCircos.Ribbon.Data                     html  
    RCircos.Ribbon.Plot                     html  
    RCircos.Scatter.Data                    html  
    RCircos.Scatter.Plot                    html  
    RCircos.Set.Base.Plot.Positions         html  
    RCircos.Set.Core.Components             html  
    RCircos.Set.Cytoband.data               html  
    RCircos.Set.Plot.Area                   html  
    RCircos.Tile.Data                       html  
    RCircos.Tile.Plot                       html  
    RCircos.Track.Outline                   html  
    RCircos.Track.Positions                 html  
    RCircos.Validate.Cyto.Info              html  
    RCircos.Validate.Genomic.Data           html  
    RCircos.Workflow                        html  
    UCSC.Baylor.3.4.Rat.cytoBandIdeogram    html  
    UCSC.HG19.Human.CytoBandIdeogram        html  
    UCSC.Mouse.GRCm38.CytoBandIdeogram      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RCircos)
Making 'packages.html' ... done