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RiboProfiling.
● Data Source:
BioConductor
● Keywords:
● Alias: RiboProfiling, RiboProfiling-package
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0 images
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aroundPromoter
(Package: RiboProfiling) :
Returns the flank size around the TSS for the x % CDSs
Returns the flank size around the TSS for the x % CDSs
● Data Source:
BioConductor
● Keywords:
● Alias: aroundPromoter
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0 images
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codonInfo
(Package: RiboProfiling) :
Associates the read counts on codons with the codon type for each ORF.
Associates the read counts on codons with the codon type for each ORF.
● Data Source:
BioConductor
● Keywords:
● Alias: codonInfo
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0 images
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codonPCA
(Package: RiboProfiling) :
PCA graphs on codon coverage
PCA graphs on codon coverage
● Data Source:
BioConductor
● Keywords:
● Alias: codonPCA
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5 images
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countShiftReads
(Package: RiboProfiling) :
Apply an offset on the read start along the transcript and
Apply an offset on the read start along the transcript and returns the coverage on the 5pUTR, CDS, 3pUTR, as well as a matrix of codon coverage per ORF.
● Data Source:
BioConductor
● Keywords:
● Alias: countShiftReads
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0 images
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countsPlot
(Package: RiboProfiling) :
Graphs of sample read counts (quality assesment)
Graphs of sample read counts (quality assesment)
● Data Source:
BioConductor
● Keywords:
● Alias: countsPlot
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2 images
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histMatchLength
(Package: RiboProfiling) :
Histogram of match length distribution of reads.
Histogram of match length distribution of reads.
● Data Source:
BioConductor
● Keywords:
● Alias: histMatchLength
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1 images
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orfRelativePos
(Package: RiboProfiling) :
Relative position of the start and stop codon along the transcript
Relative position of the start and stop codon along the transcript
● Data Source:
BioConductor
● Keywords:
● Alias: orfRelativePos
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0 images
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plotSummarizedCov
(Package: RiboProfiling) :
Plots the summarized coverage in a specified range (e.g. around TSS)
Plots the summarized coverage in a specified range (e.g. around TSS) for the specified match sizes
● Data Source:
BioConductor
● Keywords:
● Alias: plotSummarizedCov
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1 images
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printPCA
(Package: RiboProfiling) :
Plots the PCA scatterplots produced by codonPCA function.
Plots the PCA scatterplots produced by codonPCA function.
● Data Source:
BioConductor
● Keywords:
● Alias: printPCA
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2 images
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