R Graphical Manual

Last data update: 2014.03.03

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CranContrib
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Classification

Results 1 - 10 of 238 found.
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BMIQ (Package: RnBeads) : BMIQ

Performs Beta-mixture quantile normalization, adjusting for type II bias in Infinium 450K data.

● Data Source: BioConductor
● Keywords:
● Alias: BMIQ
● 0 images

ClusterArchitecture-class (Package: RnBeads) : ClusterArchitecture Class

A virtual class for storing specifications of architectures for different compute clusters. It is designed to let other classes inherit from it

● Data Source: BioConductor
● Keywords:
● Alias: ClusterArchitecture-class
● 0 images

ClusterArchitectureSGE-class (Package: RnBeads) : ClusterArchitectureSGE Class

A child class of ClusterArchitecture implementing specifications of Sun Grid Engine (SGE) architectures.

● Data Source: BioConductor
● Keywords:
● Alias: ClusterArchitectureSGE-class
● 0 images

M,RnBeadRawSet-method (Package: RnBeads) : M-methods

Extract raw methylated probe intensity from an object of RnBeadRawSet class.

● Data Source: BioConductor
● Keywords:
● Alias: M, M,RnBeadRawSet-method
● 0 images

Report-class (Package: RnBeads) : Report Class

Handler of a generated HTML report. Reports are initialized using the function createReport.

● Data Source: BioConductor
● Keywords:
● Alias: Report-class, initialize,Report-method
● 0 images

ReportGgPlot-class (Package: RnBeads) : ReportGgPlot Class

Information about the files created to store one generated plot in a report. Report plots are initialized using the function createReportGgPlot. It inherits from the ReportPlot class and handling is analogous, except that it contains an additional slot to store a ggplot object.

● Data Source: BioConductor
● Keywords:
● Alias: ReportGgPlot-class, initialize,ReportGgPlot-method
● 0 images

ReportPlot-class (Package: RnBeads) : ReportPlot Class

Information about the files created to store one generated plot in a report. Report plots are initialized using the function createReportPlot.

● Data Source: BioConductor
● Keywords:
● Alias: ReportPlot-class, initialize,ReportPlot-method
● 0 images

RnBClusterRun-class (Package: RnBeads) : RnBClusterRun Class

A class for configuring and running RnBeads on a scientific compute cluster.

● Data Source: BioConductor
● Keywords:
● Alias: RnBClusterRun-class
● 0 images

RnBDiffMeth-class (Package: RnBeads) : RnBDiffMeth Class

A class for storing differential methylation data.

● Data Source: BioConductor
● Keywords:
● Alias: RnBDiffMeth-class
● 0 images

RnBSet-class (Package: RnBeads) : RnBSet Class

Basic class for storing DNA methylation and experimental quality information

● Data Source: BioConductor
● Keywords:
● Alias: RnBSet-class
● 0 images