R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
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Results 1 - 10 of 26 found.
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Rqc-package (Package: Rqc) : Quality Control Tool for High-Throughput Sequencing Data

Rqc is an optimized tool designed for quality assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report, which contains a set of high-resolution images that can be directly used on publications.

● Data Source: BioConductor
● Keywords: package
● Alias: Rqc, Rqc-package
● 0 images

RqcResultSet-class (Package: Rqc) : Class RqcResultSet

Class RqcResultSet

● Data Source: BioConductor
● Keywords:
● Alias: RqcResultSet-class, perCycleBasecall, perCycleBasecall,RqcResultSet-method, perCycleBasecall,list-method, perCycleQuality, perCycleQuality,RqcResultSet-method, perCycleQuality,list-method, perFileInformation, perFileInformation,RqcResultSet-method, perFileInformation,list-method, perFileTopReads, perFileTopReads,RqcResultSet-method, perFileTopReads,list-method, perReadFrequency, perReadFrequency,RqcResultSet-method, perReadFrequency,list-method, perReadQuality, perReadQuality,RqcResultSet-method, perReadQuality,list-method, perReadWidth, perReadWidth,RqcResultSet-method, perReadWidth,list-method
● 0 images

checkpoint (Package: Rqc) : Save time storing longer analysis step on disk

This utility function can be used to save time on task that takes long time to complete. A Rda file are written on disk containing only objects setted to keep. If checkpoint function find related Rda file then this Rda will be loaded.

● Data Source: BioConductor
● Keywords:
● Alias: checkpoint
● 0 images

detectFileFormat (Package: Rqc) : Detect file format

Detect file format

● Data Source: BioConductor
● Keywords:
● Alias: detectFileFormat
● 0 images

fromRRDNA (Package: Rqc) : Revert codified DNA sequences to original DNA sequences.

This function receives a vector of strings containing codified DNA and returns a vector of string containing original DNA sequences.

● Data Source: BioConductor
● Keywords:
● Alias: fromRRDNA
● 0 images

matdist (Package: Rqc) : Distance matrix of the similarity between the DNA sequences.

This function receives a vector of strings representing codified DNA sequences and returns a integer matrix representing the similarities between all sequences from input vectors.

● Data Source: BioConductor
● Keywords:
● Alias: matdist
● 0 images

rqc (Package: Rqc) : Main Rqc function

Rqc is an optimized tool designed for quality assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces an HTML report, which contains a set of high-resolution images that can be directly used on publications.

● Data Source: BioConductor
● Keywords: graphics, qc
● Alias: rqc
● 0 images

rqcCycleAverageQualityPcaCalc (Package: Rqc) : Biplot of PCA of per cycle read average quality

This function creates a Biplot of PCA of per cycle read average quality

● Data Source: BioConductor
● Keywords: graphics, qc
● Alias: rqcCycleAverageQualityPcaCalc, rqcCycleAverageQualityPcaPlot
● 1 images

rqcCycleAverageQualityCalc (Package: Rqc) : Per cycle average quality by files

This function plots line graph of per cycle average quality.

● Data Source: BioConductor
● Keywords: graphics, qc
● Alias: rqcCycleAverageQualityCalc, rqcCycleAverageQualityPlot
● 1 images

rqcCycleBaseCallsCalc (Package: Rqc) : Per cycle base calls plot

Creates a bar graph of per cycle base calls.

● Data Source: BioConductor
● Keywords: graphics, qc
● Alias: rqcCycleBaseCallsCalc, rqcCycleBaseCallsLinePlot, rqcCycleBaseCallsPlot
● 1 images