Rqc

Package: Rqc
Type: Package
Title: Quality Control Tool for High-Throughput Sequencing Data
Version: 1.6.2
Author: Welliton Souza, Benilton Carvalho <beniltoncarvalho@gmail.com>
Maintainer: Welliton Souza <well309@gmail.com>
Description: Rqc is an optimised tool designed for quality control and
assessment of high-throughput sequencing data. It performs parallel
processing of entire files and produces a report which contains a set
of high-resolution graphics.
License: GPL (>= 2)
Depends: BiocParallel, ShortRead, ggplot2
Imports: BiocGenerics, Biostrings, IRanges, methods, S4Vectors, knitr
(>= 1.7), BiocStyle, plyr, markdown, grid, reshape2, digest,
Rcpp (>= 0.11.6), biovizBase, shiny, Rsamtools,
GenomicAlignments, GenomicFiles
LinkingTo: Rcpp
Suggests: testthat
VignetteBuilder: knitr
biocViews: Sequencing, QualityControl, DataImport
URL: https://github.com/labbcb/Rqc
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-05-16 05:02:37 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'Rqc' ...
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c RRDNA.cpp -o RRDNA.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o Rqc.so RRDNA.o RcppExports.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/Rqc/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'Rqc'
    finding HTML links ... done
    Rqc-package                             html  
    RqcResultSet-class                      html  
    checkpoint                              html  
    detectFileFormat                        html  
    fromRRDNA                               html  
    matdist                                 html  
    rqc                                     html  
    finding level-2 HTML links ... done

    rqcCycleAverageQualityPcaPlot           html  
    rqcCycleAverageQualityPlot              html  
    rqcCycleBaseCallsPlot                   html  
    rqcCycleGCPlot                          html  
    rqcCycleQualityBoxPlot                  html  
    rqcCycleQualityPlot                     html  
    rqcFileHeatmap                          html  
    rqcGroupCycleAverageQualityPlot         html  
    rqcQA                                   html  
Rd warning: /tmp/RtmpWC4g8m/R.INSTALL6a3f347368a1/Rqc/man/rqcQA.Rd:65: missing file link 'FastqFile'
Rd warning: /tmp/RtmpWC4g8m/R.INSTALL6a3f347368a1/Rqc/man/rqcQA.Rd:66: missing file link 'BamFile'
    rqcReadFrequencyPlot                    html  
    rqcReadQualityBoxPlot                   html  
    rqcReadQualityPlot                      html  
    rqcReadWidthPlot                        html  
    rqcReport                               html  
    rqcShinyReport                          html  
    stats4trim                              html  
    subsetByGroup                           html  
    subsetByPair                            html  
    toRRDNA                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Rqc)
Making 'packages.html' ... done