R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Data Type

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Functions
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Data set

Classification

Results 1 - 10 of 21 found.
[1] < 1 2 3 > [3] Sort:

CalcMI_time2 (Package: TDARACNE) :

Compute the d-delayed Mutual information

● Data Source: BioConductor
● Keywords:
● Alias: CalcMI_time2
● 0 images

DPI2_TDAracne (Package: TDARACNE) :

MAke the second DPI

● Data Source: BioConductor
● Keywords:
● Alias: DPI2_TDAracne
● 0 images

DPI_TDAracne (Package: TDARACNE) :

MAake the first DPI

● Data Source: BioConductor
● Keywords:
● Alias: DPI_TDAracne
● 0 images

IcEfx (Package: TDARACNE) :

Select the point of Initial change Expression of the genes

● Data Source: BioConductor
● Keywords:
● Alias: IcEfx
● 0 images

MItimeIcE2 (Package: TDARACNE) :

Compute the d-delayed Mutual information all over the whole set of genes

● Data Source: BioConductor
● Keywords:
● Alias: MItimeIcE2
● 0 images

MItimeThreshperm2 (Package: TDARACNE) :

Compute the threshold of the d-delayed Mutual information

● Data Source: BioConductor
● Keywords:
● Alias: MItimeThreshperm2
● 0 images

PercentileC (Package: TDARACNE) :

Percentile row normalization, each column goes from 0 to 1

● Data Source: BioConductor
● Keywords:
● Alias: PercentileC
● 0 images

RangeRank2 (Package: TDARACNE) :

Column Rank discretization and normalization, each row goes from 0 to 1

● Data Source: BioConductor
● Keywords:
● Alias: RangeRank2
● 0 images

TDARACNE (Package: TDARACNE) :

Main function, see P. Zoppoli, S. Morganella, M. Ceccarelli. TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach. BMC Bioinformatics 2010, 11:154.

● Data Source: BioConductor
● Keywords:
● Alias: TDARACNE
● 0 images

TDARACNEdataPublished (Package: TDARACNE) :

main function with reference paper data. This reproduce the paper results. Simply run the function with no arguments to obtain the paper results.

● Data Source: BioConductor
● Keywords:
● Alias: TDARACNEdataPublished
● 0 images