TDARACNE

Package: TDARACNE
Type: Package
Title: Network reverse engineering from time course data.
Version: 1.22.0
Date: 2009-11-11
Author: Zoppoli P.,Morganella S., Ceccarelli M.
Maintainer: Zoppoli Pietro <zoppoli.pietro@gmail.com>
Depends: GenKern, Rgraphviz, Biobase
biocViews: Microarray, TimeCourse
Description: To infer gene networks from time-series measurements is a current challenge into bioinformatics research area. In order to detect dependencies between genes at different time delays, we propose an approach to infer gene regulatory networks from time-series measurements starting from a well known algorithm based on information theory. The proposed algorithm is expected to be useful in reconstruction of small biological directed networks from time course data.
License: GPL-2
collate: IcEfx.R PercentileC.R RangeRank2.R CalcMI_time2.R bootstrap.R
saveTime.R MItimeIcE2.R MItimeThreshperm2.R DPI_TDAracne.R
DPI2_TDAracne.R ToTheGraph_timeShiftmax2.R TDARACNE.R
TDARACNEdataPublished.R plotRgraphviz.R
LazyLoad: yes
NeedsCompilation: no
Packaged: 2016-05-04 03:53:55 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'TDARACNE' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'TDARACNE'
    finding HTML links ... done
    CalcMI_time2                            html  
    DPI2_TDAracne                           html  
    DPI_TDAracne                            html  
    IcEfx                                   html  
    MItimeIcE2                              html  
    MItimeThreshperm2                       html  
    PercentileC                             html  
    RangeRank2                              html  
    TDARACNE                                html  
    TDARACNEdataPublished                   html  
    ToTheGraph_timeShiftmax2                html  
    bootstrap                               html  
    dataIRMAoff                             html  
    dataIRMAon                              html  
    dataSOSmean                             html  
    dataYeast                               html  
    plotRgraphviz                           html  
    saveTime                                html  
    threshIRMAon                            html  
    threshSOSmean                           html  
    threshYeast                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (TDARACNE)
Making 'packages.html' ... done