Reconstruct a progression model using Prim algorithm combined with probabilistic causation
● Data Source:
BioConductor
● Keywords:
● Alias: tronco.mst.prim
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tronco.pattern.plot : plot a genotype
● Data Source:
BioConductor
● Keywords:
● Alias: tronco.pattern.plot
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0 images
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Plots a progression model from a recostructed dataset
● Data Source:
BioConductor
● Keywords:
● Alias: tronco.plot
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1 images
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Print to console a short report of a dataset 'x', which should be a TRONCO compliant dataset - see is.compliant .
● Data Source:
BioConductor
● Keywords:
● Alias: view
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0 images
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Return a list of samples with specified alteration
● Data Source:
BioConductor
● Keywords:
● Alias: which.samples
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AND hypothesis
● Data Source:
BioConductor
● Keywords:
● Alias: AND
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0 images
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OR
(Package: TRONCO) :
OR
OR hypothesis
● Data Source:
BioConductor
● Keywords:
● Alias: OR
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0 images
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Map clinical data from the TCGA format
● Data Source:
BioConductor
● Keywords:
● Alias: TCGA.map.clinical.data
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0 images
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Check if there are multiple sample in x, according to TCGA barcodes naming
● Data Source:
BioConductor
● Keywords:
● Alias: TCGA.multiple.samples
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If there are multiple sample in x, according to TCGA barcodes naming, remove them
● Data Source:
BioConductor
● Keywords:
● Alias: TCGA.remove.multiple.samples
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0 images
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