R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
All

Data Type

Packages
Functions
Images
Data set

Classification

Results 1 - 10 of 11 found.
[1] < 1 2 > [2] Sort:

TSSi-package (Package: TSSi) : Transcription Start Site Identification

The TSSi package normalizes and identifies transcription start sites in high-throughput sequencing data.

● Data Source: BioConductor
● Keywords: htest, models, package
● Alias: TSSi, TSSi-package
● 1 images

TssData-class (Package: TSSi) :

Class TssData storing raw sequence read data.

● Data Source: BioConductor
● Keywords: classes, methods
● Alias: TssData, TssData-TSSi, TssData-class, show,TssData-method, show-TSSi
● 0 images

TssNorm-class (Package: TSSi) :

Class TssNorm storing normalized sequence read data.

● Data Source: BioConductor
● Keywords: classes, methods
● Alias: TssNorm, TssNorm-TSSi, TssNorm-class, show,TssNorm-method
● 0 images

TssResult-class (Package: TSSi) :

Class TssResult storing final sequence read data with identified TSS.

● Data Source: BioConductor
● Keywords: classes, methods
● Alias: TssResult, TssResult-TSSi, TssResult-class, show,TssResult-method
● 0 images

asRangedData-methods (Package: TSSi) :

Convert data and results to objects of class RangedData.

● Data Source: BioConductor
● Keywords: IO, methods
● Alias: asRangedData, asRangedData-TSSi, asRangedData-methods, readsAsRangedData, readsAsRangedData,TssData-method, readsAsRangedData-TSSi, segmentsAsRangedData, segmentsAsRangedData,TssData-method, segmentsAsRangedData-TSSi, tssAsRangedData, tssAsRangedData,TssResult-method, tssAsRangedData-TSSi
● 0 images

get-methods (Package: TSSi) :

Get methods for objects of the classes TssData, TssNorm, and TssResult.

● Data Source: BioConductor
● Keywords: methods
● Alias: [,TssData,ANY,ANY,ANY-method, [,TssData-method, [,TssNorm,ANY,ANY,ANY-method, [,TssNorm-method, [,TssResult,ANY,ANY,ANY-method, [,TssResult-method, annotation, annotation,TssData-method, annotation-TSSi, counts, counts,TssData-method, counts-TSSi, delta, delta,TssResult-method, delta-TSSi, end,TssData-method, end-TSSi, expect, expect,TssResult-method, expect-TSSi, fit, fit,TssNorm-method, fit-TSSi, get-TSSi, get-methods, names,TssData-method, names-TSSi, parameters, parameters,TssData-method, parameters-TSSi, ratio, ratio,TssNorm-method, ratio-TSSi, reads, reads,TssData-method, reads-TSSi, segments, segments,TssData-method, segments-TSSi, start,TssData-method, start-TSSi, tss, tss,TssResult-method, tss-TSSi
● 0 images

idenfify-methods (Package: TSSi) :

Identify transcription start sites in sequence read count data.

● Data Source: BioConductor
● Keywords: methods, models
● Alias: idenfify-methods, identifyStartSites, identifyStartSites,TssData-method, identifyStartSites-TSSi
● 0 images

normalizeCounts-methods (Package: TSSi) :

Normalize sequence read count data.

● Data Source: BioConductor
● Keywords: methods, models
● Alias: normalizeCounts, normalizeCounts,TssData-method, normalizeCounts-TSSi, normalizeCounts-methods
● 0 images

plot-methods (Package: TSSi) :

Plot the data and results of the TSSi package.

● Data Source: BioConductor
● Keywords: hplot, methods
● Alias: plot, plot,TssData,ANY-method, plot,TssData-method, plot,TssNorm,ANY-method, plot,TssNorm-method, plot,TssResult,ANY-method, plot,TssResult-method, plot-TSSi, plot-methods
● 2 images

segmentizeCounts-methods (Package: TSSi) :

Import sequence read count data and transform it into segments.

● Data Source: BioConductor
● Keywords: IO, methods
● Alias: segmentizeCounts, segmentizeCounts,integer,integer-method, segmentizeCounts-TSSi, segmentizeCounts-methods
● 0 images