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A class to present data for HomologGene data of a matching sequence
● Data Source:
BioConductor
● Keywords: classes
● Alias: homoACC, homoData, homoData-class, homoHGID, homoLL, homoOrg, homoType, homoURL
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htmlpage
(Package: annotate) :
Functions to build HTML pages
This function is designed to create an HTML table containing both static information as well as links to various online annotation sources.
● Data Source:
BioConductor
● Keywords: manip
● Alias: htmlpage
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isValidKey
(Package: annotate) :
Get or verify valid IDs for a package.
These functions either verify that a list of IDs are primary and valid IDs for a package, or else return all the valid primary IDs from a package
● Data Source:
BioConductor
● Keywords: manip
● Alias: allValidKeys, isValidKey
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makeAnchor
(Package: annotate) :
A Function To Generate HTML Anchors
This function will take a set of links and titles and will generate HTML anchor tags out of these values
● Data Source:
BioConductor
● Keywords: utilities
● Alias: makeAnchor
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mapOrgs
(Package: annotate) :
Functions to map to organism IDs used by NCBI homology.
These functions help map to organism identifiers used at the NCBI.
● Data Source:
BioConductor
● Keywords: manip
● Alias: getOrgNameNCode, mapOrgs
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organism
(Package: annotate) :
Convenience function for getting the organism from an object or package
The most basic organism method just takes a character string (which represents a particular annotation package) and returns the organism that said package is based upon.
● Data Source:
BioConductor
● Keywords: manip
● Alias: organism, organism,character-method
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p2LL
(Package: annotate) :
A function to map from probes to unique Entrez Gene IDs
For any chip, this function computes the map from unique Entrez Gene ID to all probes.
● Data Source:
BioConductor
● Keywords: manip
● Alias: p2LL
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pm.abstGrep
(Package: annotate) :
An interface to grep for PubMed abstracts.
A user friendly interface to the functionality provided by pubmed.
● Data Source:
BioConductor
● Keywords: manip
● Alias: pm.abstGrep
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pm.getabst
(Package: annotate) :
Obtain the abstracts for a set PubMed list.
The data provided by PubMed is reduced to a small set. This set is then suitable for further rendering.
● Data Source:
BioConductor
● Keywords: manip
● Alias: pm.getabst
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pm.titles
(Package: annotate) :
Obtain the titles of the PubMed abstracts.
This function returns the titles from a list of PubMed abstracts.
● Data Source:
BioConductor
● Keywords: manip
● Alias: pm.titles
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