annotate

Package: annotate
Title: Annotation for microarrays
Version: 1.50.0
Author: R. Gentleman
Description: Using R enviroments for annotation.
Maintainer: Bioconductor Package Maintainer <maintainer@bioconductor.org>
Depends: R (>= 2.10), AnnotationDbi (>= 1.27.5), XML
Imports: Biobase, DBI, xtable, graphics, utils, stats, methods,
BiocGenerics (>= 0.13.8)
Suggests: hgu95av2.db, genefilter, Biostrings (>= 2.25.10), rae230a.db,
rae230aprobe, tkWidgets, GO.db, org.Hs.eg.db, org.Mm.eg.db,
hom.Hs.inp.db, humanCHRLOC, Rgraphviz, RUnit,
License: Artistic-2.0
LazyLoad: yes
Collate: ACCNUMStats.R Amat.R AnnMaps.R chromLocation.R
compatipleVersions.R findNeighbors.R getData.R getPMInfo.R
getSeq4ACC.R GOhelpers.R homoData.R html.R isValidKey.R
LL2homology.R pmid2MIAME.R probesByLL.R pubMedAbst.R query.R
readGEOAnn.R serializeEnv.R blastSequences.R zzz.R
test_annotate_package.R
biocViews: Annotation, Pathways, GO
Packaged: 2016-05-04 02:38:28 UTC; biocbuild
NeedsCompilation: no

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'annotate' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'annotate'
    finding HTML links ... done
    ACCNUMStats                             html  
    GO2heatmap                              html  
    GOmnplot                                html  
    HTMLPage-class                          html  
    LL2homology                             html  
    PMIDAmat                                html  
    PWAmat                                  html  
    UniGeneQuery                            html  
    accessionToUID                          html  
    annPkgName                              html  
    annotate-defunct                        html  
    aqListGOIDs                             html  
    blastSequences                          html  
    buildChromLocation                      html  
    buildPubMedAbst                         html  
    chrCats                                 html  
    chromLocation-class                     html  
    compatibleVersions                      html  
    dropECode                               html  
    entrezGeneByID                          html  
    entrezGeneQuery                         html  
    filterGOByOntology                      html  
    findNeighbors                           html  
    genbank                                 html  
    getAnnMap                               html  
    getEvidence                             html  
    getGOTerm                               html  
    getOntology                             html  
    getPMInfo                               html  
    getSYMBOL                               html  
    getSeq4Acc                              html  
    getTDRows                               html  
    hasGOannote                             html  
    hgByChroms                              html  
    hgCLengths                              html  
    hgu95AProbLocs                          html  
    hgu95Achroloc                           html  
    hgu95Achrom                             html  
    hgu95All                                html  
    hgu95Asym                               html  
    homoData-class                          html  
    htmlpage                                html  
    isValidkey                              html  
    makeAnchor                              html  
    mapOrgs                                 html  
    organism                                html  
    p2LL                                    html  
    pm.abstGrep                             html  
    pm.getabst                              html  
    pm.titles                               html  
    pmAbst2HTML                             html  
    pmid2MIAME                              html  
    pmidQuery                               html  
    pubMedAbst-class                        html  
    pubmed                                  html  
    readGEOAnn                              html  
    serializeEnv                            html  
    setRepository                           html  
    updateSymbolsToValidKeys                html  
    usedChromGenes                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (annotate)
Making 'packages.html' ... done