R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 10 of 37 found.
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1. Calibration and Normalization (Package: aroma.light) : 1. Calibration and Normalization

In this section we give our recommendation on how spotted two-color (or multi-color) microarray data is best calibrated and normalized.

● Data Source: BioConductor
● Keywords: documentation
● Alias: 1. Calibration and Normalization
● 0 images

Non-documented objects (Package: aroma.light) : Non-documented objects

This page contains aliases for all "non-documented" objects that R CMD check detects in this package.

● Data Source: BioConductor
● Keywords: documentation, internal
● Alias: Non-documented objects
● 0 images

aroma.light-package (Package: aroma.light) : Package aroma.light

Methods for microarray analysis that take basic data types such as matrices and lists of vectors. These methods can be used standalone, be utilized in other packages, or be wrapped up in higher-level classes.

● Data Source: BioConductor
● Keywords: package
● Alias: aroma.light, aroma.light-package
● 0 images

averageQuantile (Package: aroma.light) : Gets the average empirical distribution

Gets the average empirical distribution for a set of samples.

● Data Source: BioConductor
● Keywords: methods, multivariate, nonparametric, robust
● Alias: averageQuantile
● 0 images

backtransformAffine (Package: aroma.light) : Reverse affine transformation

Reverse affine transformation.

● Data Source: BioConductor
● Keywords: methods
● Alias: backtransformAffine
● 0 images

backtransformPrincipalCurve (Package: aroma.light) : Reverse transformation of principal-curve fit

Reverse transformation of principal-curve fit.

● Data Source: BioConductor
● Keywords: methods
● Alias: backtransformPrincipalCurve
● 0 images

calibrateMultiscan (Package: aroma.light) : Weighted affine calibration of a multiple re-scanned channel

Weighted affine calibration of a multiple re-scanned channel.

● Data Source: BioConductor
● Keywords: methods
● Alias: calibrateMultiscan
● 0 images

callNaiveGenotypes (Package: aroma.light) : Calls genotypes in a normal sample

Calls genotypes in a normal sample.

● Data Source: BioConductor
● Keywords: methods
● Alias: callNaiveGenotypes
● 1 images

distanceBetweenLines (Package: aroma.light) : Finds the shortest distance between two lines

Finds the shortest distance between two lines.

● Data Source: BioConductor
● Keywords: algebra
● Alias: distanceBetweenLines, distanceBetweenLines.default
● 0 images

findPeaksAndValleys (Package: aroma.light) : Finds extreme points in the empirical density estimated from data

Finds extreme points in the empirical density estimated from data.

● Data Source: BioConductor
● Keywords: internal, methods
● Alias: findPeaksAndValleys
● 1 images