aroma.light

Package: aroma.light
Version: 3.2.0
Depends: R (>= 2.15.2)
Imports: R.methodsS3 (>= 1.7.0), R.oo (>= 1.19.0), R.utils (>= 2.2.0),
matrixStats (>= 0.50.1)
Suggests: princurve (>= 1.1-12)
Date: 2016-01-06
Title: Light-Weight Methods for Normalization and Visualization of
Microarray Data using Only Basic R Data Types
Authors@R: c(
person("Henrik", "Bengtsson", role=c("aut", "cre", "cph"),
email = "henrikb@braju.com"),
person("Pierre", "Neuvial", role="ctb"))
Description: Methods for microarray analysis that take basic data types such as matrices and lists of vectors. These methods can be used standalone, be utilized in other packages, or be wrapped up in higher-level classes.
License: GPL (>= 2)
biocViews: Infrastructure, Microarray, OneChannel, TwoChannel,
MultiChannel, Visualization, Preprocessing
URL: https://github.com/HenrikBengtsson/aroma.light,
http://www.aroma-project.org
BugReports: https://github.com/HenrikBengtsson/aroma.light/issues
LazyLoad: TRUE
Encoding: latin1
NeedsCompilation: no
Packaged: 2016-05-04 02:53:02 UTC; biocbuild
Author: Henrik Bengtsson [aut, cre, cph],
Pierre Neuvial [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'aroma.light' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'aroma.light'
    finding HTML links ... done
    1._Calibration_and_Normalization        html  
    Non-documented_objects                  html  
    aroma.light-package                     html  
    averageQuantile                         html  
    backtransformAffine                     html  
    backtransformPrincipalCurve             html  
    calibrateMultiscan                      html  
    callNaiveGenotypes                      html  
    distanceBetweenLines                    html  
    findPeaksAndValleys                     html  
    fitIWPCA                                html  
    fitNaiveGenotypes                       html  
    fitPrincipalCurve                       html  
    fitXYCurve                              html  
    iwpca                                   html  
    likelihood.smooth.spline                html  
    medianPolish                            html  
    normalizeAffine                         html  
    normalizeAverage                        html  
    normalizeCurveFit                       html  
    normalizeDifferencesToAverage           html  
    normalizeFragmentLength                 html  
    normalizeQuantileRank                   html  
    normalizeQuantileRank.matrix            html  
    normalizeQuantileSpline                 html  
    normalizeTumorBoost                     html  
    pairedAlleleSpecificCopyNumbers         html  
    plotDensity                             html  
    plotMvsA                                html  
    plotMvsAPairs                           html  
    plotMvsMPairs                           html  
    plotXYCurve                             html  
    print.SmoothSplineLikelihood            html  
    robustSmoothSpline                      html  
    sampleCorrelations                      html  
    sampleTuples                            html  
    wpca                                    html  
** building package indices
** testing if installed package can be loaded
* DONE (aroma.light)
Making 'packages.html' ... done