R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 10 of 12 found.
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biomvRCNS-class (Package: biomvRCNS) : Class code{"biomvRCNS"

The default object class returned by biomvRhsmm, biomvRseg and biomvRmgmr

● Data Source: BioConductor
● Keywords: classes
● Alias: biomvRCNS-class, plot,biomvRCNS,ANY-method, show,biomvRCNS-method
● 0 images

biomvRGviz (Package: biomvRCNS) :

This function could be called to plot segmentation output, together with the input signal and optional annotation. By default resulting image will be printed to file. The plot method for class biomvRCNS-class also calls this method. See the vignette for a more complete example.

● Data Source: BioConductor
● Keywords:
● Alias: biomvRGviz
● 1 images

biomvRhsmm (Package: biomvRCNS) :

The batch function of building Hidden Semi Markov Model (HSMM) to estimate the most likely state sequences for multiple input data series.

● Data Source: BioConductor
● Keywords: hsmm
● Alias: biomvRhsmm
● 0 images

biomvRmgmr (Package: biomvRCNS) :

This is a wrapper function for batch processing multiple sequences and samples using max-gap-min-run algorithm for 2 states segmentation

● Data Source: BioConductor
● Keywords:
● Alias: biomvRmgmr
● 0 images

biomvRseg (Package: biomvRCNS) :

The function will perform a two stage segmentation on multi-sample genomic data from array experiment or high throughput sequencing data.

● Data Source: BioConductor
● Keywords:
● Alias: biomvRseg
● 0 images

hsmmRun (Package: biomvRCNS) :

This is the working horse of the biomvRhsmm

● Data Source: BioConductor
● Keywords: hsmm
● Alias: hsmmRun
● 0 images

maxGapminRun (Package: biomvRCNS) :

A custom Max-gap-min-run implementation using physical position for gap and run length calculation.

● Data Source: BioConductor
● Keywords:
● Alias: maxGapminRun
● 0 images

regionSegAlphaNB (Package: biomvRCNS) :

Estimate matrix of dispersion parameter alpha (size) used in regionSegCost for negative binomial distributed x.

● Data Source: BioConductor
● Keywords:
● Alias: regionSegAlphaNB
● 0 images

regionSegCost (Package: biomvRCNS) :

To calculate regional cost matrix for the initial stage and second merging stage of the segmentation model.

● Data Source: BioConductor
● Keywords:
● Alias: regionSegCost
● 0 images

simSegData (Package: biomvRCNS) :

Simulate exemplary segmentation data.

● Data Source: BioConductor
● Keywords:
● Alias: simSegData
● 0 images