biomvRCNS

Package: biomvRCNS
Type: Package
Title: Copy Number study and Segmentation for multivariate biological
data
Version: 1.12.0
Date: 2015-06-04
Author: Yang Du
Maintainer: Yang Du <tooyoung@gmail.com>
Description: In this package, a Hidden Semi Markov Model (HSMM) and one
homogeneous segmentation model are designed and implemented for
segmentation genomic data, with the aim of assisting in
transcripts detection using high throughput technology like
RNA-seq or tiling array, and copy number analysis using aCGH or
sequencing.
License: GPL (>= 2)
LazyLoad: yes
Imports: methods, mvtnorm
Depends: IRanges, GenomicRanges, Gviz
Suggests: cluster, parallel, GenomicFeatures, dynamicTreeCut,
Rsamtools, TxDb.Hsapiens.UCSC.hg19.knownGene
biocViews: aCGH, CopyNumberVariation, Microarray, Sequencing,
Sequencing, Visualization, Genetics
NeedsCompilation: yes
Packaged: 2016-05-04 04:52:36 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'biomvRCNS' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c biomvRCNS.c -o biomvRCNS.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o biomvRCNS.so biomvRCNS.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/biomvRCNS/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'biomvRCNS'
    finding HTML links ... done
    biomvRCNS-class                         html  
    biomvRGviz                              html  
    biomvRhsmm                              html  
    biomvRmgmr                              html  
    biomvRseg                               html  
    coriell                                 html  
    encodeTP53                              html  
    hsmmRun                                 html  
    maxGapminRun                            html  
    regionSegAlphaNB                        html  
    regionSegCost                           html  
    simSegData                              html  
    sojournAnno                             html  
    splitFarNeighbour                       html  
    variosm                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (biomvRCNS)
Making 'packages.html' ... done