Correction of plate and spatial effects of data stored in slot assayData of a cellHTS object using the B score method (without variance adjustment of the residuals). Using this method, a two-way median polish is fitted, on a per-plate basis, to account for row and column effects.
Container for data that represent a receiver-operator-characteristic curve, and that were generated from the data of the annotated positive and negative controls in a scored cellHTS object.
ROC
(Package: cellHTS2) :
Creates an object of class "ROC" which can be plotted as a ROC curve
The function ROC construct an object of S4 class ROC, which represents a receiver-operator-characteristic curve, from the data of the annotated positive and negative controls in a scored cellHTS object.
annotate
(Package: cellHTS2) :
Annotates the reagents (probes) of a cellHTS object
Annotate the reagents (probes) of a cellHTS object. In RNAi-screens, there is a often a 1:1 correspondence between reagents and intended target genes, hence in this software package the term gene ID is used as a synonym.
cellHTS-class
(Package: cellHTS2) :
A class for data from cell-based high-throughput assays
Container for data and experimental meta-data from cell-based high-throughput assays performed in plate format. Typical applications are RNA interference or small molecular compound screens. The class extends the NChannelSet class. Data are from experiments where the same set of reagents (probes) where used. The class can represent data from multi-channel assays.