Last data update: 2014.03.03

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Results 1 - 10 of 42 found.
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Bscore (Package: cellHTS2) : B score normalization

Correction of plate and spatial effects of data stored in slot assayData of a cellHTS object using the B score method (without variance adjustment of the residuals). Using this method, a two-way median polish is fitted, on a per-plate basis, to account for row and column effects.
● Data Source: BioConductor
● Keywords: manip
● Alias: Bscore
● 0 images

Data (Package: cellHTS2) : Access and replace the assayData slot of a cellHTS object

This generic function accesses and replaces the data stored in slot assayData of an object of cellHTS class.
● Data Source: BioConductor
● Keywords: manip
● Alias: Data, Data,cellHTS-method, Data<-, Data<-,cellHTS,array-method
● 0 images

ROC-class (Package: cellHTS2) :

Container for data that represent a receiver-operator-characteristic curve, and that were generated from the data of the annotated positive and negative controls in a scored cellHTS object.
● Data Source: BioConductor
● Keywords: classes
● Alias: ROC-class
● 0 images

ROC (Package: cellHTS2) : Creates an object of class "ROC" which can be plotted as a ROC curve

The function ROC construct an object of S4 class ROC, which represents a receiver-operator-characteristic curve, from the data of the annotated positive and negative controls in a scored cellHTS object.
● Data Source: BioConductor
● Keywords: univar
● Alias: ROC, ROC,cellHTS-method
1 images

annotate (Package: cellHTS2) : Annotates the reagents (probes) of a cellHTS object

Annotate the reagents (probes) of a cellHTS object. In RNAi-screens, there is a often a 1:1 correspondence between reagents and intended target genes, hence in this software package the term gene ID is used as a synonym.
● Data Source: BioConductor
● Keywords:
● Alias: annotate, annotate,cellHTS-method
● 0 images

batch (Package: cellHTS2) :

This method accesses and replaces the batch data stored in the slot plateData of a cellHTS object.
● Data Source: BioConductor
● Keywords: manip
● Alias: batch, batch,cellHTS-method, batch<-, batch<-,cellHTS,data.frame-method
● 0 images

buildCellHTS2 (Package: cellHTS2) : Build a cellHTS2 object from a data frame containing measurements

Builds a cellHTS2 object from a data frame.
● Data Source: BioConductor
● Keywords:
● Alias: buildCellHTS2
● 0 images

cellHTS-class (Package: cellHTS2) : A class for data from cell-based high-throughput assays

Container for data and experimental meta-data from cell-based high-throughput assays performed in plate format. Typical applications are RNA interference or small molecular compound screens. The class extends the NChannelSet class. Data are from experiments where the same set of reagents (probes) where used. The class can represent data from multi-channel assays.
● Data Source: BioConductor
● Keywords: classes
● Alias: cellHTS, cellHTS-class, class.cellHTS
● 0 images

cellHTS2 (Package: cellHTS2) : cellHTS2 Package Overview

cellHTS2 Package Overview
● Data Source: BioConductor
● Keywords: package
● Alias: cellHTS2, cellHTS2-package
● 0 images

configurationAsScreenPlot (Package: cellHTS2) : Screen plot of the plate configuration of a cellHTS object

Screen plot displaying the plate configuration of a cellHTS object.
● Data Source: BioConductor
● Keywords:
● Alias: configurationAsScreenPlot
1 images