R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
BioConductor
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Results 1 - 10 of 13 found.
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cgdsr-setVerbose (Package: cgdsr) : Set verbose logging level for CGDS function calls

Sets verbose logging level for CGDS function calls.

● Data Source: CranContrib
● Keywords:
● Alias: cgdsr-setVerbose, setVerbose, setVerbose.CGDS
● 0 images

cgdsr-getCancerStudies (Package: cgdsr) : Get available cancer studies available in CGDS

Queries the CGDS API and returns available cancer studies. Input is a CGDS object and output is a data.matrix with information regarding the different cancer studies.

● Data Source: CranContrib
● Keywords:
● Alias: cgdsr-getCancerStudies, getCancerStudies, getCancerStudies.CGDS
● 0 images

cgdsr-test (Package: cgdsr) : Simple test suite for CGDS object.

Queries the CGDS API and returns results of the tests.

● Data Source: CranContrib
● Keywords:
● Alias: cgdsr-test, test, test.CGDS
● 0 images

cgdsr-getClinicalData (Package: cgdsr) : Get clinical data for cancer study

Queries the CGDS API and returns clinical data for a given case list.

● Data Source: CranContrib
● Keywords:
● Alias: cgdsr-getClinicalData, getClinicalData, getClinicalData.CGDS
● 0 images

cgdsr-package (Package: cgdsr) :

The package provides a basic set of R functions for querying the Cancer Genomics Data Server (CGDS), hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC). Read more about this service at the cBio Cancer Genomics Portal, http://www.cbioportal.org/.

● Data Source: CranContrib
● Keywords: package
● Alias: cgdsr, cgdsr-package
● 0 images

cgdsr-getProfileData (Package: cgdsr) : Retrieves genomic profile data for genes and genetic profiles.

Queries the CGDS API and returns data based on gene(s), genetic profile(s), and a case list.

● Data Source: CranContrib
● Keywords:
● Alias: cgdsr-getProfileData, getProfileData, getProfileData.CGDS
● 0 images

cgdsr-processURL (Package: cgdsr) : Internal methods for CGDS library.

These methods should not be invoked by the user.

● Data Source: CranContrib
● Keywords:
● Alias: cgdsr-processURL, processURL, processURL.CGDS
● 0 images

cgdsr-getCaseLists (Package: cgdsr) : Get available case lists for a specific cancer study

Queries the CGDS API and returns available case lists for a specific cancer study.

● Data Source: CranContrib
● Keywords:
● Alias: cgdsr-getCaseLists, getCaseLists, getCaseLists.CGDS
● 0 images

cgdsr-getMutationData (Package: cgdsr) : Get mutation data for cancer study

Queries the CGDS API and returns mutation data for a given case set and list of genes.

● Data Source: CranContrib
● Keywords:
● Alias: cgdsr-getMutationData, getMutationData, getMutationData.CGDS
● 0 images

cgdsr-setPlotErrorMsg (Package: cgdsr) : Set custom plot error message

Sets custom plot error message.

● Data Source: CranContrib
● Keywords:
● Alias: cgdsr-setPlotErrorMsg, setPlotErrorMsg, setPlotErrorMsg.CGDS
● 0 images