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Last data update: 2014.03.03
Data Source
R Release (3.2.3)
CranContrib
BioConductor
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Results 1 - 6 of 6 found.
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SGOL-class
(Package: cghMCR) :
Class "SGOL" reprents segments of gain or loss across samples
Segments of gains or losses along chromosomes can be calculated based on segmentation data derived from the segment function of the DNAcopy package
● Data Source:
BioConductor
● Keywords: classes
● Alias: SGOL, SGOL-class, gol, gol,SGOL-method, method,SGOL-method, plot, plot,ANY-method, plot,SGOL,ANY-method, plot,SGOL-method, plot,methods, threshold,SGOL-method
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cghMCR-class
(Package: cghMCR) :
Class "cghMCR" is a S4 class for the identification of minimum
Objects of this class provides the functionalities to detecting chromosome regions that show gains or losses across differnet samples
● Data Source:
BioConductor
● Keywords: classes
● Alias: MCR, MCR,cghMCR-method, cghMCR-class, getSegments, getSegments,marrayNorm-method, getSegments,marrayRaw-method
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cghMCR
(Package: cghMCR) :
The constructor for the cghMCR class
Instantiates a cghMCR object using the parameters passed.
● Data Source:
BioConductor
● Keywords: methods
● Alias: cghMCR, segData
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mergeMCRProbes
(Package: cghMCR) :
A function that appends probe ids to a data frame containing MCRs
This function takes a data frame generated by MCR and then append probe ids corresponding to each MCR as a column to the data frame.
● Data Source:
BioConductor
● Keywords: manip
● Alias: mergeMCRProbes
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colnames-methods
(Package: cghMCR) :
Methods for Function colnames/rownames in Package `cghMCR'
Methods for function colnames or rownames in Package ‘cghMCR’ to extract row or column names from a SGOL object
● Data Source:
BioConductor
● Keywords: methods
● Alias: [,SGOL-method, [-methods, colnames,SGOL-method, colnames-methods, rownames,SGOL-method, rownames-methods
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plot.DNAcopy
(Package: cghMCR) :
A function to plot the original data along with the segments
This function takes a DNAcopy object generated by running getSegments and then plots the original data along with the segments identified.
● Data Source:
BioConductor
● Keywords: hplot
● Alias: plot.DNAcopy
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