R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
BioConductor
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Classification

Results 1 - 10 of 92 found.
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COSMIC_UCSC (Package: coMET) :

Create one track of the genomic positions of variants from COSMIC, the "Catalogue Of Somatic Mutations In Cancer" using the Gviz bioconductor package

● Data Source: BioConductor
● Keywords: hplot
● Alias: COSMIC_UCSC
● 0 images

ChIPTF_ENCODE (Package: coMET) :

Creates a track of TF motifs from ENCODE using the Gviz bioconductor package. A complete list of features and their associated colours can be found in the user guide.

● Data Source: BioConductor
● Keywords: hplot
● Alias: ChIPTF_ENCODE
● 0 images

ClinVarCnv_UCSC (Package: coMET) :

Create one track of the genomic positions of variants from the ClinVar database (CNV only, Variants excluded) using the Gviz bioconductor package

● Data Source: BioConductor
● Keywords: hplot
● Alias: ClinVarCnv_UCSC
● 1 images

ClinVarMain_UCSC (Package: coMET) :

Create one track of the genomic positions of variants from the ClinVar database (Variants only, CNV excluded) using the Gviz bioconductor package

● Data Source: BioConductor
● Keywords: hplot
● Alias: ClinVarMain_UCSC
● 1 images

CoreillCNV_UCSC (Package: coMET) :

Create one track of the genomic positions of copy-number variants (CNVs) in chromosomal aberration and inherited disorder cell lines from the NIGMS Human Genetic Cell Repository using the Gviz bioconductor package.

● Data Source: BioConductor
● Keywords: hplot
● Alias: CoreillCNV_UCSC
● 0 images

DNAse_UCSC (Package: coMET) :

Creation of DNase cluster track from a connection to UCSC genome browser in using the GViz bioconductor package

● Data Source: BioConductor
● Keywords: hplot
● Alias: DNAse_UCSC
● 0 images

DNaseI_FANTOM (Package: coMET) :

Creates a track of promoters/enhancers from FANTOM using the Gviz bioconductor package. A complete list of features and their associated colours can be found in the user guide.

● Data Source: BioConductor
● Keywords: hplot
● Alias: DNaseI_FANTOM
● 0 images

DNaseI_RoadMap (Package: coMET) :

Creates a track of promoter/enhancer regions from a file of RoadMap using the Gviz bioconductor package. A complete list of features and their associated colours can be found in the user guide.

● Data Source: BioConductor
● Keywords: hplot
● Alias: DNaseI_RoadMap
● 0 images

GAD_UCSC (Package: coMET) :

Create one track of the genomic positions of variants from the Genetic Association Database (GAD) (archive of human genetic association studies of complex diseases and disorders) using the Gviz bioconductor package

● Data Source: BioConductor
● Keywords: hplot
● Alias: GAD_UCSC
● 0 images

GWAScatalog_UCSC (Package: coMET) :

Create one track of the genomic positions of variants from the NHGRI Catalog of Published Genome-Wide Association Studies using the Gviz bioconductor package

● Data Source: BioConductor
● Keywords: hplot
● Alias: GWAScatalog_UCSC
● 1 images