plotRECON
(Package: corHMM) :
Plot ancestral state reconstructions
Plots maximum likelihood ancestral state estimates on tree
● Data Source:
CranContrib
● Keywords: plot
● Alias: plotRECON
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0 images
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corPAINT
(Package: corHMM) :
Binary character evolution with tree painting
Fits multiple rate models of correlated evolution between one, two, or three binary traits to paintings on branches
● Data Source:
CranContrib
● Keywords: models
● Alias: corPAINT
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0 images
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rayDISC
(Package: corHMM) :
Evolution of categorical traits
Fits a model of evolution for categorical traits, allowing for multi-state characters, polymorphisms, missing data, and incompletely resolved trees
● Data Source:
CranContrib
● Keywords: models
● Alias: dev.raydisc, rayDISC
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0 images
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lewisMkv
(Package: corHMM) :
Phylogenetic inference of morphology using mkv model
An implementation of Lewis' (2001) mkv model for inferring topology and branch lengths based on morphological characters.
● Data Source:
CranContrib
● Keywords: models
● Alias: lewisMkv
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0 images
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readNexusMorph
(Package: corHMM) :
Reads morphological character data In NEXUS Format
This function reads a file with character scoring in the NEXUS format and provides a properly formatted data set to input into the lewisMkv function.
● Data Source:
CranContrib
● Keywords: file
● Alias: readNexusMorph
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0 images
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Generates and manipulates the index of the rate parameters to be optimized
● Data Source:
CranContrib
● Keywords: models
● Alias: rate.mat.maker, rate.par.drop, rate.par.eq
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0 images
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corHMM
(Package: corHMM) :
Hidden Rates Model
Estimates hidden rates underlying the evolution of a binary character
● Data Source:
CranContrib
● Keywords: models
● Alias: corHMM
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0 images
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corDISC
(Package: corHMM) :
Correlated evolution binary traits
Fits a model of correlated evolution between two or three binary traits
● Data Source:
CranContrib
● Keywords: models
● Alias: corDISC
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0 images
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ancRECON
(Package: corHMM) :
Ancestral state reconstruction
Infers ancestral states based on a set of model parameters
● Data Source:
CranContrib
● Keywords: reconstructions
● Alias: ancRECON
●
0 images
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providing 
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