R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
BioConductor
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Classification

Results 1 - 10 of 14 found.
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Proteome-class (Package: dagLogo) : Class code{"Proteome"

An object of class "Proteome" represents proteome of a given species.

● Data Source: BioConductor
● Keywords: classes
● Alias: Proteome-class
● 0 images

buildBackgroundModel (Package: dagLogo) :

build background model for dag test

● Data Source: BioConductor
● Keywords: misc
● Alias: buildBackgroundModel
● 0 images

colorsets (Package: dagLogo) :

retrieve prepared color setting for logo

● Data Source: BioConductor
● Keywords: figure
● Alias: colorsets
● 0 images

dagBackground-class (Package: dagLogo) : Class code{"dagBackground"

An object of class "dagBackground" represents background model.

● Data Source: BioConductor
● Keywords: classes
● Alias: dagBackground-class
● 0 images

dagHeatmap (Package: dagLogo) :

plot heatmap for test results

● Data Source: BioConductor
● Keywords: figure
● Alias: dagHeatmap
● 2 images

dagLogo-package (Package: dagLogo) :

We implement iceLogo by R to visualize significant conserved amino acid sequence pattern based on probability theory. Compare to iceLogo, dagLogo can also visualize significant sequence patterns by clustering the peptides by groups such as charge, chemistry, hydrophobicity and etc.

● Data Source: BioConductor
● Keywords: package
● Alias: dagLogo-package
● 1 images

dagLogo (Package: dagLogo) :

plot sequence logo for test results

● Data Source: BioConductor
● Keywords: figure
● Alias: dagLogo
● 1 images

dagPeptides-class (Package: dagLogo) : Class code{"dagPeptides"

An object of class "dagPeptides" represents the information of peptides.

● Data Source: BioConductor
● Keywords: classes
● Alias: dagPeptides-class
● 0 images

fetchSequence (Package: dagLogo) :

fetch amino acid sequence by given identifiers via biomaRt or proteome prepared by prepareProteome

● Data Source: BioConductor
● Keywords: misc
● Alias: fetchSequence
● 0 images

formatSequence (Package: dagLogo) :

prepare an object of dagPeptides from sequences

● Data Source: BioConductor
● Keywords: misc
● Alias: formatSequence
● 0 images