dagLogo

Package: dagLogo
Type: Package
Title: dagLogo
Version: 1.10.2
Date: 2016-05-03
Author: Jianhong Ou, Alexey Stukalov, Niraj Nirala, Usha Acharya, Lihua Julie Zhu
Maintainer: Jianhong Ou <jianhong.ou@umassmed.edu>
Description: Visualize significant conserved amino acid sequence pattern in groups based on probability theory.
License: GPL (>=2)
Depends: R (>= 3.0.1), methods, biomaRt, grImport, grid, motifStack
Imports: pheatmap, Biostrings
Suggests: XML, UniProt.ws, BiocStyle, knitr, rmarkdown, testthat
biocViews: SequenceMatching, Visualization
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-05-16 04:07:10 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'dagLogo' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'dagLogo'
    finding HTML links ... done
    Proteome                                html  
    buildBackgroundModel                    html  
    colorsets                               html  
    dagBackground                           html  
    dagHeatmap                              html  
    dagLogo-package                         html  
    dagLogo                                 html  
    dagPeptides                             html  
    ecoli.proteome                          html  
    fetchSequence                           html  
    formatSequence                          html  
    nameHash                                html  
    prepareProteome                         html  
    proteome.example                        html  
    seq.example                             html  
    testDAU                                 html  
    testDAUresults                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (dagLogo)
Making 'packages.html' ... done