GOHyperG
(Package: davidTiling) :
Hypergeometric test for GO category enrichment.
This function is adapted from the function of the same name in GOstats package. Main difference is that it draws the GO annotations of the genes in candidates from the data.frame gff. It also draws a plot.
● Data Source:
BioConductor
● Keywords: manip
● Alias: GOHyperG
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getAttributeField
(Package: davidTiling) :
Extract the value of a certain field out of a character vector
Extract the value of a certain field out of a character vector such as in the "attributes" column of a GFF table.
● Data Source:
BioConductor
● Keywords: manip
● Alias: getAttributeField
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getAllGO
(Package: davidTiling) :
Get all GO categories for a list of genes.
The function uses the GO categories in the data.frame gff to obtain annotated GO categories, then the GO**ANCESTOR data in the GO package to add all parent terms as well.
● Data Source:
BioConductor
● Keywords: manip
● Alias: getAllGO
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scatterWithHist
(Package: davidTiling) :
Scatterplot with histograms of marginal distributions
Scatterplot with histograms of marginal distributions.
● Data Source:
BioConductor
● Keywords: hplot
● Alias: scatterWithHist
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1 images
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Score the segments found by a previous call to findSegments by comparing to genome annotation
● Data Source:
BioConductor
● Keywords: manip
● Alias: scoreSegments
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showDens
(Package: davidTiling) :
Plot function for more than one density
Plot function for more than one density
● Data Source:
BioConductor
● Keywords: hplot
● Alias: showDens
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1 images
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