davidTiling

Package: davidTiling
Version: 1.12.0
Title: Data and analysis scripts for David, Huber et al. yeast tiling
array paper
Author: Wolfgang Huber <huber@ebi.ac.uk>, Joern Toedling <toedling@ebi.ac.uk>
Maintainer: Wolfgang Huber <huber@ebi.ac.uk>
Depends: R (>= 2.10), Biobase (>= 2.5.5), tilingArray, GO.db
Description: This package contains the data for the paper by L. David et al. in PNAS 2006 (PMID 16569694): 8 CEL files of Affymetrix genechips, an ExpressionSet object with the raw feature data, a probe annotation data structure for the chip and the yeast genome annotation (GFF file) that was used. In addition, some custom-written analysis functions are provided, as well as R scripts in the scripts directory.
biocViews: ExperimentData, Genome, Saccharomyces_cerevisiae_Data,
MicroarrayData, ReproducibleResearch
Reference: A high-resolution map of transcription in the yeast genome.
David L, Huber W, Granovskaia M, Toedling J, Palm CJ, Bofkin L,
Jones T, Davis RW, Steinmetz LM. Proc Natl Acad Sci U S A. 2006
Apr 4;103(14):5320-5.
License: LGPL
URL: http://www.ebi.ac.uk/huber
NeedsCompilation: no
Packaged: 2016-05-07 20:10:48 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'davidTiling' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'davidTiling'
    finding HTML links ... done
    GOHyperG                                html  
    davidTiling                             html  
    getAttributeField                       html  
    getGO                                   html  
    gff                                     html  
    probeAnno                               html  
    scatterWithHist                         html  
    scoreSegments                           html  
    showDens                                html  
    yeastFeatures                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (davidTiling)
Making 'packages.html' ... done