remove_leaves_nodePar
(Package: dendextend) :
Remove all nodePar values from a dendrogram's leaves
Go through the dendrogram leaves and remove its nodePar.
● Data Source:
CranContrib
● Keywords:
● Alias: remove_leaves_nodePar
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remove_branches_edgePar
(Package: dendextend) :
Remove all edgePar values from a dendrogram's branches
Go through the dendrogram branches and remove its edgePar.
● Data Source:
CranContrib
● Keywords:
● Alias: remove_branches_edgePar
●
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Generally, leaves order value should be a sequence of integer values. From 1 to nleaves(dend). This function fixes trees by using rank on existing leaves order values.
● Data Source:
CranContrib
● Keywords:
● Alias: rank_order.dendrogram
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labels_colors
(Package: dendextend) :
Retrieve/assign colors to the labels of a dendrogram
Retrieve/assign colors to the labels of a dendrogram. Note that usually dend objects come without any color assignment (and the output will be NULL, until colors are assigned).
● Data Source:
CranContrib
● Keywords:
● Alias: labels_col, labels_colors, labels_colors<-
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dist.dendlist
(Package: dendextend) :
Topological Distances Between Two dendrograms
This function computes the Robinson-Foulds distance (also known as symmetric difference) between two dendrograms. This is the sum of edges in both trees with labels that exist in only one of the two trees (i.e.: the length of distinct_edges).
● Data Source:
CranContrib
● Keywords:
● Alias: dist.dendlist
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get_root_branches_attr
(Package: dendextend) :
get attributes from the dendrogram's root(!) branches
get attributes from the dendrogram's root(!) branches
● Data Source:
CranContrib
● Keywords:
● Alias: get_root_branches_attr
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set
(Package: dendextend) :
Set (/update) features to a dendrogram
a master function for updating various attributes and features of dendrogram objects.
● Data Source:
CranContrib
● Keywords:
● Alias: set, set.data.table, set.dendlist, set.dendrogram
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rllply
(Package: dendextend) :
recursivly apply a function on a list
recursivly apply a function on a list - and returns the output as a list, following the naming convention in the plyr package the big difference between this and rapply is that this will also apply the function on EACH element of the list, even if it's not a "terminal node" inside the list tree. An attribute is added to indicate if the value returned is from a branch or a leaf.
● Data Source:
CranContrib
● Keywords:
● Alias: rllply
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Samples a tree, either by permuting the labels (which is usefull for a permutation test), or by repeated sampling of the same labels (essential for bootstraping when we don't have access to the original data which produced the tree).
● Data Source:
CranContrib
● Keywords:
● Alias: sample.dendrogram
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dist_long
(Package: dendextend) :
Turns a dist object to a "long" table
Turns a dist object from a "wide" to a "long" table
● Data Source:
CranContrib
● Keywords:
● Alias: dist_long
●
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providing 
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