hc.score
(Package: fdrtool) :
Compute Empirical Higher Criticism Scores and Corresponding Decision Threshold From p-Values
hc.score computes the empirical higher criticism (HC) scores from p-values.
● Data Source:
CranContrib
● Keywords: htest
● Alias: hc.score, hc.thresh
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gcmlcm
(Package: fdrtool) :
Greatest Convex Minorant and Least Concave Majorant
gcmlcm computes the greatest convex minorant (GCM) or the least concave majorant (LCM) of a piece-wise linear function.
● Data Source:
CranContrib
● Keywords: smooth
● Alias: gcmlcm
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pval.estimate.eta0
(Package: fdrtool) :
Estimate the Proportion of Null p-Values
pval.estimate.eta0 estimates the proportion eta0 of null p-values in a given vector of p-values.
● Data Source:
CranContrib
● Keywords: htest
● Alias: pval.estimate.eta0
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censored.fit
(Package: fdrtool) :
Fit Null Distribution To Censored Data by Maximum Likelihood
censored.fit fits a null distribution to censored data.
● Data Source:
CranContrib
● Keywords: htest
● Alias: censored.fit, fndr.cutoff
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dcor0
(Package: fdrtool) :
Distribution of the Vanishing Correlation Coefficient (rho=0) and Related Functions
The above functions describe the distribution of the Pearson correlation coefficient r assuming that there is no correlation present (rho = 0).
● Data Source:
CranContrib
● Keywords: distribution
● Alias: dcor0, pcor0, qcor0, rcor0
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fdrtool
(Package: fdrtool) :
Estimate (Local) False Discovery Rates For Diverse Test Statistics
fdrtool takes a vector of z-scores (or of correlations, p-values, or t-statistics), and estimates for each case both the tail area-based Fdr as well as the density-based fdr (=q-value resp. local false discovery rate). The parameters of the null distribution are estimated adaptively from the data (except for the case of p-values where this is not necessary).
● Data Source:
CranContrib
● Keywords: htest
● Alias: fdrtool
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grenader
(Package: fdrtool) :
Grenander Estimator of a Decreasing or Increasing Density
The function grenander computes the Grenander estimator of a one-dimensional decreasing or increasing density.
● Data Source:
CranContrib
● Keywords: univar
● Alias: grenander, plot.grenander
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halfnormal
(Package: fdrtool) :
The Half-Normal Distribution
Density, distribution function, quantile function and random generation for the half-normal distribution with parameter theta.
● Data Source:
CranContrib
● Keywords: distribution
● Alias: halfnormal
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monoreg
(Package: fdrtool) :
Monotone Regression: Isotonic Regression and Antitonic Regression
monoreg performs monotone regression (either isotonic or antitonic) with weights.
● Data Source:
CranContrib
● Keywords: regression, smooth
● Alias: fitted.monoreg, monoreg, plot.monoreg, residuals.monoreg
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Internal fdrtool functions.
● Data Source:
CranContrib
● Keywords: internal
● Alias: pvt.isoMean, r2t, t2r
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