autoGate
(Package: flowStats) :
Automated gating of single populations in 2D
This function tries to fit a single norm2Filter based on a rough preselection of the data. This function is considered internal. Please use the API provided by lymphGate.
● Data Source:
BioConductor
● Keywords: misc
● Alias: autoGate
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0 images
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binByRef
(Package: flowStats) :
Bin a test data set using bins previously created by probability
The bins generated by probability binning a control data set can be applied to a test data set to perfom statistical comparisions by methods such as the Chi-squared test or the probability binning statistic.
● Data Source:
BioConductor
● Keywords: misc
● Alias: binByRef
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0 images
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calcPBChiSquare
(Package: flowStats) :
Probability binning metirc for comparing the probability binned
This function calculates the Probability binning metric proposed by Baggerly et al. The function utilizes the data binned using the proBin and binByRef functions.
● Data Source:
BioConductor
● Keywords: misc
● Alias: calcPBChiSquare
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1 images
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calcPearsonChi
(Package: flowStats) :
Pearsons chi-square statistic for comparing the probability
This function calculates the Pearsons chi-squared statistic for comparing data binned using the proBin and binByRef functions.Internally, the function utilizes the chisq.test function.
● Data Source:
BioConductor
● Keywords: misc
● Alias: calcPearsonChi
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1 images
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Class and constructor for data-driven filter objects that selects high-density regions in one dimension.
● Data Source:
BioConductor
● Keywords: classes, methods
● Alias: %in%,flowFrame,curv1Filter-method, curv1Filter, curv1Filter-class, show,curv1Filter-method, summarizeFilter,multipleFilterResult,curv1Filter-method
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0 images
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Class and constructor for data-driven filter objects that selects high-density regions in two dimensions.
● Data Source:
BioConductor
● Keywords: classes, methods
● Alias: %in%,flowFrame,curv2Filter-method, curv2Filter, curv2Filter-class, show,curv2Filter-method, summarizeFilter,multipleFilterResult,curv2Filter-method
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0 images
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curvPeaks
(Package: flowStats) :
Parse curv1Filter output
Parse the output of curv1Filter and find modes and midpoints of the high-density regions. This function is considered to be internal.
● Data Source:
BioConductor
● Keywords:
● Alias: curvPeaks
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0 images
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density1d
(Package: flowStats) :
Find most likely separation between positive and negative
The function tries to find a reasonable split point between the two hypothetical cell populations "positive" and "negative". This function is considered internal, please use the API provided by rangeGate.
● Data Source:
BioConductor
● Keywords:
● Alias: density1d
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5 images
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Functions, methods and classes implementing algorithmns for statistical analysis of flow cytometry data. This involves mostly data normalization and automated gating.
● Data Source:
BioConductor
● Keywords: package
● Alias: flowStats-package
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0 images
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gaussNorm
(Package: flowStats) :
Per-channel normalization based on landmark registration
This funciton normalizes a set of flow cytometry data samples by identifying and aligning the high density regions (landmarks or peaks) for each channel. The data of each channel is shifted in such a way that the identified high density regions are moved to fixed locations called base landmarks.
● Data Source:
BioConductor
● Keywords:
● Alias: gaussNorm
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1 images
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