R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Results 1 - 10 of 20 found.
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HWE.exact (Package: genetics) : Exact Test of Hardy-Weinberg Equilibrium for 2-Allele Markers

Exact test of Hardy-Weinberg Equilibrium for 2 Allele Markers.

● Data Source: CranContrib
● Keywords: misc
● Alias: HWE.exact
● 0 images

undocumented (Package: genetics) : Undocumented functions

These functions are undocumented. Some are internal and not intended for direct use. Some are not yet ready for end users. Others simply haven't been documented yet.

● Data Source: CranContrib
● Keywords: misc
● Alias: allele.count.2.genotype, as.factor, as.factor.allele.genotype, as.factor.default, as.factor.genotype, geno.as.array, hap, hapambig, hapenum, hapfreq, hapmcmc, hapshuffle, mknum, mourant, shortsummary.genotype
● 0 images

ci.balance (Package: genetics) : Experimental Function to Correct Confidence Intervals At or Near

Experimental function to correct confidence intervals at or near boundaries of the parameter space by 'sliding' the interval on the quantile scale.

● Data Source: CranContrib
● Keywords: misc
● Alias: ci.balance
● 0 images

groupGenotype (Package: genetics) : Group genotype values

groupGenotype groups genotype or haplotype values according to given "grouping/mapping" information

● Data Source: CranContrib
● Keywords: manip, misc
● Alias: groupGenotype
● 0 images

write.pop.file (Package: genetics) : Create genetics data files

write.pop.file creates a 'pop' data file, as used by the GenePop (http://wbiomed.curtin.edu.au/genepop/) and LinkDos (http://wbiomed.curtin.edu.au/genepop/linkdos.html) software packages.

● Data Source: CranContrib
● Keywords: IO
● Alias: write.marker.file, write.pedigree.file, write.pop.file
● 0 images

HWE.chisq (Package: genetics) : Perform Chi-Square Test for Hardy-Weinberg Equilibrium

Test the null hypothesis that Hardy-Weinberg equilibrium holds using the Chi-Square method.

● Data Source: CranContrib
● Keywords: misc
● Alias: HWE.chisq, HWE.chisq.genotype
● 0 images

genotype (Package: genetics) : Genotype or Haplotype Objects.

genotype creates a genotype object.

● Data Source: CranContrib
● Keywords: misc
● Alias: as.genotype, as.haplotype, genotype, haplotype, is.genotype, is.haplotype
● 0 images

print.LD (Package: genetics) : Textual and graphical display of linkage disequilibrium (LD) objects

Textual and graphical display of linkage disequilibrium (LD) objects

● Data Source: CranContrib
● Keywords: misc
● Alias: LDplot, LDtable, plot.LD.data.frame, print.LD, print.LD.data.frame, print.summary.LD.data.frame, summary.LD.data.frame
● 0 images

summary.genotype (Package: genetics) : Allele and Genotype Frequency from a Genotype or

summary.genotype creates an object containing allele and genotype frequency from a genotype or haplotype object. print.summary.genotype displays a summary.genotype object.

● Data Source: CranContrib
● Keywords: misc
● Alias: print.summary.genotype, summary.genotype
● 0 images

makeGenotypes (Package: genetics) : Convert columns in a dataframe to genotypes or haplotypes

Convert columns in a dataframe to genotypes or haplotypes.

● Data Source: CranContrib
● Keywords: misc
● Alias: makeGenotypes, makeHaplotypes
● 0 images