genetics

Package: genetics
Title: Population Genetics
Version: 1.3.8.1
Date: 2012-11-26
Author: Gregory Warnes, with contributions from Gregor Gorjanc,
Friedrich Leisch, and Michael Man.
Maintainer: Gregory Warnes <greg@warnes.net>
Depends: combinat, gdata, gtools, MASS, mvtnorm
Description: Classes and methods for handling genetic data. Includes
classes to represent genotypes and haplotypes at single markers
up to multiple markers on multiple chromosomes. Function
include allele frequencies, flagging homo/heterozygotes,
flagging carriers of certain alleles, estimating and testing
for Hardy-Weinberg disequilibrium, estimating and testing for
linkage disequilibrium, ...
biocViews: Genetics
License: GPL
Packaged: 2013-09-03 10:04:45 UTC; ripley
Repository: CRAN
Date/Publication: 2013-09-03 12:06:28
NeedsCompilation: no

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'genetics' ...
** package 'genetics' successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'genetics'
    finding HTML links ... done
    HWE.chisq                               html  
    HWE.exact                               html  
    HWE.test                                html  
    LD                                      html  
    ci.balance                              html  
    depreciated                             html  
Rd warning: /tmp/RtmpRKxmt5/R.INSTALL4eec1651c840/genetics/man/depreciated.Rd:17: missing file link 'GeneticPower.Quantitative.Factor'
    diseq                                   html  
    expectedGenotypes                       html  
    genotype                                html  
    gregorius                               html  
    groupGenotype                           html  
    homozygote                              html  
    locus                                   html  
    makeGenotypes                           html  
    order.genotype                          html  
    plot.genotype                           html  
    print.LD                                html  
    summary.genotype                        html  
    undocumented                            html  
    write.pop.file                          html  
** building package indices
** testing if installed package can be loaded
* DONE (genetics)
Making 'packages.html' ... done