R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
All

Data Type

Packages
Functions
Images
Data set

Classification

Results 1 - 10 of 14 found.
[1] < 1 2 > [2] Sort:

globalSeq-package (Package: globalSeq) : globalSeq

Testing for association between RNA-Seq and high-dimensional data

● Data Source: BioConductor
● Keywords: documentation
● Alias: globalSeq, globalSeq-package
● 0 images

intern.chromo (Package: globalSeq) : Internal function

Communicates between cursus and omnibus by coordinating a chromosome-wide analysis.

● Data Source: BioConductor
● Keywords: misc
● Alias: intern.chromo
● 0 images

intern.crude (Package: globalSeq) : Internal function

Using the parameter estimates mu and phi and the permutation matrix perm, these functions tests for global association between y and X. The function intern.crude calculates p-values by permutation (without repetitions). The functions intern.focus and intern.conva use different tricks to increase precision and decrease computational expense.

● Data Source: BioConductor
● Keywords: misc
● Alias: intern.conva, intern.crude, intern.focus
● 0 images

intern.estim (Package: globalSeq) : Internal function

This functions estimates the parameters of the negative binomial distribution by maximum likelihood. It is called by the functions omnibus and proprius.

● Data Source: BioConductor
● Keywords: misc
● Alias: intern.estim
● 0 images

intern.matrix (Package: globalSeq) : Internal function

Convert RNA-Seq data to a numeric matrix

● Data Source: BioConductor
● Keywords: misc
● Alias: intern.matrix
● 0 images

intern.permu (Package: globalSeq) : Internal function

The number of permutations of n elements is n!. This function randomly rearranges the elements it times, and then deletes all duplicates. Thus it finds always less than it and n! permutations. If a confounding variable is provided, the function uses stratified permutation. This function is called by the functions omnibus and proprius.

● Data Source: BioConductor
● Keywords: misc
● Alias: intern.permu
● 0 images

intern.plot (Package: globalSeq) : Internal function

This function plots the individual contributions to the test statistic. It is called by the function proprius.

● Data Source: BioConductor
● Keywords: misc
● Alias: intern.plot
● 1 images

intern.sam (Package: globalSeq) : Internal function

These functions calculate the contribution of covariate or samples to the test statistic. They are called by the function proprius.

● Data Source: BioConductor
● Keywords: misc
● Alias: intern.cov, intern.sam
● 0 images

intern.score (Package: globalSeq) : Internal function

This function calculates the test statistic. It is called by the function omnibus.

● Data Source: BioConductor
● Keywords: misc
● Alias: intern.score
● 0 images

intern.select (Package: globalSeq) : Internal function

Communicates between cursus and omnibus by selecting the covariates of interest.

● Data Source: BioConductor
● Keywords: misc
● Alias: intern.select
● 0 images