R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 9 of 9 found.
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Comparative proportions (Package: globaltest) : Comparative proportions for the Global Test

Comparing the result of a global test performed on a subset to the test results of random subsets of the same size.

● Data Source: BioConductor
● Keywords: htest
● Alias: comparative
● 0 images

Diagnostic plots for globaltest (Package: globaltest) : Global Test diagnostic plots

Plots to visualize the result of a Global Test in terms of the contributions of the covariates and the subjects.

● Data Source: BioConductor
● Keywords: htest
● Alias: covariates, diagnostics, features, subjects
● 9 images

gt gene set testing methods (Package: globaltest) : Gene set testing of gene set databases using Global Test

A collection of procedures for performing the Global Test on gene set databases. Three function are provided for KEGG, for Gene Ontology and for the Broad Institute's gene sets.

● Data Source: BioConductor
● Keywords: htest
● Alias: gtBroad, gtConcept, gtGO, gtKEGG
● 0 images

gt goodness of fit methods (Package: globaltest) : Goodness of fit testing in regression models using Global Test

Tests the goodness of fit of a regression model against a specified alternative using the Global Test. Three main functions are provided: gtPS uses Penalized Splines, gtKS uses Kernel Smoothers and gtLI uses Linear Interactions. The other functions are for external use in combination with gt.

● Data Source: BioConductor
● Keywords: goodness-of-fit
● Alias: bbase, btensor, gtKS, gtLI, gtPS, reparamZ, reweighZ, sterms
● 0 images

gt (Package: globaltest) : Global Test

Tests a low-dimensional null hypothesis against a potentially high-dimensional alternative in regression models (linear regression, logistic regression, poisson regression, Cox proportional hazards model).

● Data Source: BioConductor
● Keywords: htest
● Alias: globaltest, gt
● 0 images

gt.object class (Package: globaltest) : Class "gt.object" for storing the result of the function gt

The class gt.object is the output of a call to gt. It stores the information needed for various diagnostic plots.

● Data Source: BioConductor
● Keywords: methods
● Alias: [,gt.object-method, [[,gt.object-method, alias,gt.object-method, alias<-, alias<-,gt.object-method, extract, extract,gt.object-method, gt.object, gt.object-class, hist,gt.object-method, length,gt.object-method, model.matrix,gt.object-method, names,gt.object-method, names<-,gt.object-method, p.adjust,gt.object-method, p.value, p.value,gt.object-method, result, result,gt.object-method, show,gt.object-method, size, size,gt.object-method, sort,gt.object-method, sterms,gt.object-method, subsets, subsets,gt.object-method, summary,gt.object-method, weights,gt.object-method, z.score, z.score,gt.object-method
● 4 images

gt.options (Package: globaltest) : Options for globaltest package

Sets various global options for the functions in the globaltest package.

● Data Source: BioConductor
● Keywords: htest
● Alias: gt.options
● 0 images

mlogit (Package: globaltest) : Multinomial Logistic Regression

Fits a multinomial logistic regression model to a nominal scale outcome.

● Data Source: BioConductor
● Keywords: nonlinear
● Alias: coefficients,mlogit-method, fitted.values,mlogit-method, mlogit, mlogit-class, residuals,mlogit-method, show,mlogit-method, summary,mlogit-method
● 0 images

Multiple testing methods of the globaltest package (Package: globaltest) : Multiple testing correction for the Global Test

A collection of multiple testing procedures for the Global Test. Methods for the focus level procedure of Goeman and Mansmann for graph-structured hypotheses, and for the inheritance procedure based on Meinshausen.

● Data Source: BioConductor
● Keywords: htest
● Alias: draw, findFocus, focusLevel, inheritance, leafNodes
● 0 images